Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LG542_RS05495 Genome accession   NZ_CP045007
Coordinates   1120495..1121175 (-) Length   226 a.a.
NCBI ID   WP_057907889.1    Uniprot ID   -
Organism   Latilactobacillus graminis strain LG542     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1115495..1126175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG542_RS05475 (LG542_05480) rpsT 1115989..1116243 (+) 255 WP_057907885.1 30S ribosomal protein S20 -
  LG542_RS05480 (LG542_05485) holA 1116655..1117683 (-) 1029 WP_057907886.1 DNA polymerase III subunit delta -
  LG542_RS05485 (LG542_05490) comEC 1117684..1119759 (-) 2076 WP_226789452.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LG542_RS05490 (LG542_05495) - 1119945..1120433 (-) 489 WP_057907888.1 ComE operon protein 2 -
  LG542_RS05495 (LG542_05500) comEA 1120495..1121175 (-) 681 WP_057907889.1 helix-hairpin-helix domain-containing protein Machinery gene
  LG542_RS05500 (LG542_05505) - 1121252..1122298 (-) 1047 WP_057907890.1 SepM family pheromone-processing serine protease -
  LG542_RS05505 (LG542_05510) coaD 1122300..1122794 (-) 495 WP_057907891.1 pantetheine-phosphate adenylyltransferase -
  LG542_RS05510 (LG542_05515) rsmD 1122806..1123360 (-) 555 WP_057907892.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LG542_RS05515 (LG542_05520) - 1123366..1123656 (-) 291 WP_057907893.1 YlbG family protein -
  LG542_RS05520 (LG542_05525) - 1123680..1124768 (-) 1089 WP_057907894.1 CAP-associated domain-containing protein -
  LG542_RS05525 (LG542_05530) - 1124784..1125962 (-) 1179 WP_057907895.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25539.30 Da        Isoelectric Point: 9.5860

>NTDB_id=391203 LG542_RS05495 WP_057907889.1 1120495..1121175(-) (comEA) [Latilactobacillus graminis strain LG542]
MWRDYWLRYRRFWWVLCLLIIILGGGIGWQHKRQRQFLVANQQLMTRTSKKKTKTVKQTQPVIKGGFVDLKGAVAHPGIY
PIHVSQTRLFEVLKQAGDVTEAADTSQLNLAQTLVDQLIIYVPTNGEAVSAQELVKIAEKPTIASIANNADHEQETDQDT
TTTKINLNQADVTQLQTLNGIGPKKAEQIITYRDEQGQFKQIEDLQKVGGIGPKTFEQLRTQICVN

Nucleotide


Download         Length: 681 bp        

>NTDB_id=391203 LG542_RS05495 WP_057907889.1 1120495..1121175(-) (comEA) [Latilactobacillus graminis strain LG542]
ATGTGGCGTGATTATTGGCTACGATATCGACGGTTCTGGTGGGTACTATGTTTATTGATCATCATACTTGGAGGTGGAAT
AGGTTGGCAGCACAAGCGGCAACGACAGTTTTTGGTGGCTAATCAACAGTTAATGACACGAACGAGTAAGAAAAAGACGA
AGACGGTGAAACAAACTCAGCCGGTTATCAAAGGAGGGTTCGTTGATTTAAAAGGGGCAGTCGCCCATCCGGGGATTTAT
CCGATTCATGTTTCGCAGACACGACTATTCGAAGTACTTAAACAAGCTGGTGATGTGACAGAAGCGGCAGATACTAGTCA
GCTAAACTTAGCACAAACATTAGTTGATCAATTAATCATCTATGTGCCAACTAATGGCGAAGCAGTTAGCGCCCAAGAGC
TTGTCAAAATAGCCGAAAAGCCAACCATAGCAAGTATTGCTAATAATGCTGATCATGAGCAGGAAACCGATCAGGATACG
ACTACGACCAAAATTAATCTGAATCAAGCAGATGTGACTCAATTACAGACTTTAAATGGGATTGGGCCAAAAAAAGCTGA
ACAAATAATTACGTATCGGGATGAACAAGGGCAGTTTAAACAAATTGAAGATTTACAAAAAGTTGGTGGGATTGGACCAA
AAACGTTTGAACAATTGCGGACACAAATTTGTGTTAATTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(163-224)

SLBB domain (SLBB)

(68-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

60.669

100

0.642

Multiple sequence alignment