Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LG542_RS05100 Genome accession   NZ_CP045007
Coordinates   1035215..1036081 (-) Length   288 a.a.
NCBI ID   WP_057908497.1    Uniprot ID   A0AA89KWU3
Organism   Latilactobacillus graminis strain LG542     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1030215..1041081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG542_RS05085 (LG542_05090) topA 1031446..1033530 (-) 2085 WP_057908494.1 type I DNA topoisomerase -
  LG542_RS05090 (LG542_05095) - 1033789..1034232 (-) 444 WP_057908495.1 Rrf2 family transcriptional regulator -
  LG542_RS05095 (LG542_05100) - 1034265..1035119 (-) 855 WP_057908496.1 SDR family oxidoreductase -
  LG542_RS05100 (LG542_05105) dprA 1035215..1036081 (-) 867 WP_057908497.1 DNA-processing protein DprA Machinery gene
  LG542_RS05105 (LG542_05110) - 1036131..1036892 (-) 762 WP_057908498.1 ribonuclease HII -
  LG542_RS05110 (LG542_05115) ylqF 1036889..1037740 (-) 852 WP_057908499.1 ribosome biogenesis GTPase YlqF -
  LG542_RS05115 (LG542_05120) lepB 1037752..1038306 (-) 555 WP_057908500.1 signal peptidase I -
  LG542_RS05120 (LG542_05125) - 1038306..1038530 (-) 225 WP_057908501.1 YozE family protein -
  LG542_RS05125 (LG542_05130) - 1038540..1039178 (-) 639 WP_057908502.1 YpmS family protein -
  LG542_RS05130 (LG542_05135) - 1039194..1040093 (-) 900 WP_057908503.1 SGNH/GDSL hydrolase family protein -
  LG542_RS05135 (LG542_05140) - 1040185..1041030 (-) 846 WP_151886746.1 DegV family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31964.16 Da        Isoelectric Point: 8.9996

>NTDB_id=391199 LG542_RS05100 WP_057908497.1 1035215..1036081(-) (dprA) [Latilactobacillus graminis strain LG542]
MLTKKQLLLKVHLAKGFGPASELRLAAWLVTSHNWALSALEIAQIACLPERYWTTFQASFVSRDLQVKCAHHECRVQYVT
ILETAYPQRLLETYCPPVVLFYRGNLQLLKRPCVAIVGARQATQYTKQALQRLLELSPATTIISGLAQGADAMAHEVTMQ
KGLRPIGVIGTGLNCYYPPQNERLQQQVAEEGILISEYGLDVTAKKHHFPARNRIIAGLCHSLVVTEARQKSGSLITANL
ALQANRNVYALPGQINHSLSAGCNQLILSGATPLLNQRLLMDELHYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=391199 LG542_RS05100 WP_057908497.1 1035215..1036081(-) (dprA) [Latilactobacillus graminis strain LG542]
GTGTTGACTAAAAAGCAATTACTATTGAAAGTTCATCTGGCCAAAGGGTTCGGTCCAGCTAGTGAACTGCGGTTGGCCGC
GTGGTTGGTGACAAGCCATAATTGGGCATTATCGGCACTGGAGATTGCCCAAATTGCGTGCTTGCCAGAACGTTATTGGA
CAACATTTCAAGCGAGCTTCGTAAGTCGTGATTTGCAAGTGAAATGTGCGCATCATGAGTGCCGTGTTCAATATGTGACA
ATCTTAGAAACCGCATATCCACAACGTTTATTGGAAACGTATTGTCCGCCAGTAGTGTTATTTTATCGGGGAAATCTACA
ATTGTTAAAGCGCCCGTGTGTAGCAATTGTGGGTGCTCGGCAAGCGACTCAGTATACAAAACAAGCGCTACAGCGTTTAT
TAGAACTATCACCCGCAACCACAATTATTAGTGGCTTGGCACAAGGCGCGGATGCGATGGCTCATGAAGTTACCATGCAA
AAAGGATTACGACCAATTGGCGTGATTGGAACGGGCTTGAATTGTTATTATCCGCCACAGAACGAACGTCTTCAGCAGCA
AGTTGCTGAAGAAGGAATATTGATATCCGAATATGGTTTGGACGTAACCGCTAAGAAGCACCACTTCCCAGCCAGAAATC
GGATCATCGCCGGACTTTGTCATAGTTTAGTGGTCACAGAAGCCCGCCAAAAAAGTGGCAGCTTGATTACCGCTAATTTA
GCATTGCAAGCCAATCGGAATGTGTATGCCTTACCGGGTCAGATTAATCATTCATTATCGGCAGGTTGTAATCAGTTAAT
CTTGTCTGGGGCAACGCCGCTTTTAAATCAACGGTTGTTAATGGATGAGTTACATTATTTTGATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

74.653

100

0.747
  dprA Legionella pneumophila strain ERS1305867

37.282

99.653

0.372

Multiple sequence alignment