Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | F9C43_RS24935 | Genome accession | NZ_CP045002 |
| Coordinates | 5368436..5369308 (+) | Length | 290 a.a. |
| NCBI ID | WP_016264267.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain PAG5 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5363436..5374308
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F9C43_RS24915 (F9C43_25510) | - | 5363604..5364907 (-) | 1304 | Protein_4930 | ISL3-like element IS1411 family transposase | - |
| F9C43_RS24920 (F9C43_25515) | - | 5365035..5365283 (-) | 249 | Protein_4931 | pilin | - |
| F9C43_RS24925 (F9C43_25520) | pilB | 5365514..5367214 (+) | 1701 | WP_003122078.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| F9C43_RS24930 (F9C43_25525) | pilC | 5367218..5368435 (+) | 1218 | WP_003107299.1 | type II secretion system F family protein | Machinery gene |
| F9C43_RS24935 (F9C43_25530) | pilD | 5368436..5369308 (+) | 873 | WP_016264267.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| F9C43_RS24940 (F9C43_25535) | coaE | 5369305..5369916 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| F9C43_RS24945 (F9C43_25540) | yacG | 5369913..5370113 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| F9C43_RS24950 (F9C43_25545) | - | 5370150..5370359 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| F9C43_RS24955 (F9C43_25550) | - | 5370465..5371154 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| F9C43_RS24960 (F9C43_25555) | - | 5371151..5371621 (-) | 471 | WP_003103866.1 | hypothetical protein | - |
| F9C43_RS24965 (F9C43_25560) | - | 5371618..5372043 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| F9C43_RS24970 (F9C43_25565) | - | 5372176..5372805 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| F9C43_RS24975 (F9C43_25570) | - | 5372802..5373251 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| F9C43_RS24980 (F9C43_25575) | - | 5373277..5373447 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31903.93 Da Isoelectric Point: 7.7068
>NTDB_id=391174 F9C43_RS24935 WP_016264267.1 5368436..5369308(+) (pilD) [Pseudomonas aeruginosa strain PAG5]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=391174 F9C43_RS24935 WP_016264267.1 5368436..5369308(+) (pilD) [Pseudomonas aeruginosa strain PAG5]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55 |
96.552 |
0.531 |
| pilD | Vibrio campbellii strain DS40M4 |
52.297 |
97.586 |
0.51 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.561 |
95.862 |
0.466 |