Detailed information NTG0391143

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: DAAJ005_RS08405
• Genome accession: NZ_CP044990
• Coordinates: 1354930..1356150 (-)
• Length: 406 a.a.
• NCBI ID: WP_151846721.1
• Uniprot ID: A0A5J6YUK2
• Organism: Deinococcus sp. AJ005
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1349930..1361150

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DAAJ005_RS18910	-	1350198..1350737 (+)	540	WP_192930904.1	hypothetical protein	-
DAAJ005_RS08390 (DAAJ005_08390)	-	1350728..1352080 (+)	1353	WP_151846718.1	penicillin-binding protein 2	-
DAAJ005_RS08395 (DAAJ005_08395)	-	1352616..1353257 (+)	642	WP_151846719.1	hypothetical protein	-
DAAJ005_RS08400 (DAAJ005_08400)	-	1353489..1354694 (+)	1206	WP_151846720.1	ABC transporter permease	-
DAAJ005_RS08405 (DAAJ005_08405)	pilC	1354930..1356150 (-)	1221	WP_151846721.1	type II secretion system F family protein	Machinery gene
DAAJ005_RS08410 (DAAJ005_08410)	-	1356208..1356843 (+)	636	WP_151846722.1	L-threonylcarbamoyladenylate synthase	-
DAAJ005_RS08415 (DAAJ005_08415)	-	1356840..1357385 (+)	546	WP_226342644.1	SMC-Scp complex subunit ScpB	-
DAAJ005_RS08420 (DAAJ005_08420)	-	1357553..1358311 (+)	759	WP_151846723.1	DUF4388 domain-containing protein	-
DAAJ005_RS08425 (DAAJ005_08425)	aguB	1358370..1359275 (+)	906	WP_151846724.1	N-carbamoylputrescine amidase	-
DAAJ005_RS08430 (DAAJ005_08430)	-	1359401..1360438 (-)	1038	WP_151846725.1	C40 family peptidase	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44425.40 Da
• Isoelectric Point: 9.0166

>NTDB_id=391143 DAAJ005_RS08405 WP_151846721.1 1354930..1356150(-) (pilC) [Deinococcus sp. AJ005]
MAVFEYRARDRSGKILKSQMEAETEAQVRDTLRAKNLMIVEIKAPKSGLNADLKIPFLDDRPPSLKQVSIFSKQLATLIN
AGVPLVQSLAVLQGQIEHKGFQKTVKSLRSEVEAGTPLSEAIAKYPKVFNRLYVNLVRAGETSGTLDSVLERIAAFQEKE
LILRGKIKSALTYPVVVLVFAILITYFLLTTIVPQFAGILAQLNAPLPFITKMLMAVSEFLQHSAWLLVVFAVIITFAYR
WVYKMPKGRVIIDDIKLKLPVFGNLTQKSAIASFARTFGLLISSGVNIIEALEITKGTADNAIVEETIENAKNVVMVGEQ
MSSSLATSKVFPPMVVSMISIGEETGALDSMLSKVGDFYDREVDEAVESMTAAIEPIMIVFLGGIVGTIVAGMFLPMFSI
IGTLSQ

Nucleotide

• Length: 1221 bp

>NTDB_id=391143 DAAJ005_RS08405 WP_151846721.1 1354930..1356150(-) (pilC) [Deinococcus sp. AJ005]
ATGGCCGTCTTCGAATACCGCGCACGCGACCGCTCTGGCAAGATCCTCAAATCCCAGATGGAGGCCGAAACGGAGGCCCA
GGTCCGCGACACGCTGCGGGCCAAGAACCTGATGATCGTCGAGATCAAGGCCCCCAAGTCCGGCCTGAACGCGGACCTCA
AGATTCCCTTTCTGGATGACCGCCCGCCCAGCCTCAAGCAGGTGTCGATCTTCAGCAAACAGCTCGCCACGCTGATCAAC
GCCGGGGTGCCGCTGGTGCAGTCGCTGGCGGTGTTGCAGGGCCAGATCGAACACAAGGGCTTTCAGAAGACCGTCAAATC
CCTGCGCAGCGAGGTAGAGGCAGGCACGCCCCTGAGCGAGGCCATCGCCAAGTATCCCAAGGTCTTTAACCGCCTCTATG
TCAATCTGGTGCGCGCCGGGGAAACCAGCGGCACCCTGGACTCGGTGCTGGAGCGCATCGCTGCCTTCCAGGAAAAGGAA
TTGATCCTGCGCGGCAAGATCAAGAGCGCGCTGACCTACCCGGTGGTGGTGCTGGTCTTCGCCATCCTGATCACCTATTT
CCTGCTGACCACCATCGTGCCGCAGTTCGCGGGCATCCTGGCACAGCTCAACGCGCCGCTGCCCTTTATTACCAAGATGC
TGATGGCAGTCTCGGAATTCCTGCAACATTCGGCGTGGCTACTCGTGGTCTTCGCGGTGATCATCACCTTCGCCTACCGC
TGGGTGTACAAGATGCCCAAGGGCCGGGTGATCATTGACGACATCAAGCTCAAGCTGCCCGTGTTCGGCAACCTGACCCA
GAAGAGCGCCATCGCATCCTTTGCCCGCACCTTCGGCCTGCTGATCAGCAGCGGCGTGAACATCATCGAGGCGCTGGAAA
TCACCAAGGGCACGGCGGACAACGCCATCGTCGAGGAAACCATCGAGAACGCCAAGAATGTGGTGATGGTGGGCGAGCAG
ATGAGTTCCAGCCTGGCCACCAGCAAGGTTTTTCCGCCGATGGTGGTCAGCATGATCTCTATCGGCGAGGAAACCGGCGC
GCTGGACTCGATGCTGAGCAAGGTGGGCGACTTCTATGACCGCGAAGTGGATGAGGCCGTCGAGAGCATGACGGCGGCCA
TCGAACCGATCATGATCGTCTTCCTGGGCGGCATTGTGGGGACCATCGTGGCGGGGATGTTTTTGCCGATGTTCAGCATC
ATCGGTACGCTCAGCCAGTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

• Type II secretion system (T2SS), protein F (T2SSF) (274-396)

3D structure

• AlphaFold DB: A0A5J6YUK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	57.882	100	0.579
pilC	Pseudomonas stutzeri DSM 10701	36.476	99.261	0.362