Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   F9K07_RS23980 Genome accession   NZ_CP044549
Coordinates   5209442..5209840 (-) Length   132 a.a.
NCBI ID   WP_159597079.1    Uniprot ID   A0A6P1J7W4
Organism   Hydrogenophaga sp. BPS33     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5204442..5214840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9K07_RS23965 (F9K07_23925) - 5206183..5208435 (-) 2253 WP_159595799.1 methyl-accepting chemotaxis protein -
  F9K07_RS23970 (F9K07_23930) - 5208514..5209047 (-) 534 WP_159595800.1 chemotaxis protein CheW -
  F9K07_RS23975 (F9K07_23935) - 5209077..5209442 (-) 366 WP_159595801.1 response regulator -
  F9K07_RS23980 (F9K07_23940) pilG 5209442..5209840 (-) 399 WP_159597079.1 response regulator Regulator
  F9K07_RS23985 (F9K07_23945) - 5209942..5210115 (-) 174 WP_159595802.1 rubredoxin -
  F9K07_RS23990 (F9K07_23950) - 5210279..5211223 (+) 945 WP_159595803.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  F9K07_RS23995 (F9K07_23955) hemL 5211241..5212542 (+) 1302 WP_159595804.1 glutamate-1-semialdehyde 2,1-aminomutase -
  F9K07_RS24000 (F9K07_23960) purH 5212705..5214291 (-) 1587 WP_159595805.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  F9K07_RS24005 (F9K07_23965) - 5214360..5214596 (-) 237 WP_159595806.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14522.76 Da        Isoelectric Point: 6.9487

>NTDB_id=390957 F9K07_RS23980 WP_159597079.1 5209442..5209840(-) (pilG) [Hydrogenophaga sp. BPS33]
MVSTTPALKVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALAKINDYQPDLVFCDILMPRLDGYQTCAIIKRNARFA
NIPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGANLTGAV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=390957 F9K07_RS23980 WP_159597079.1 5209442..5209840(-) (pilG) [Hydrogenophaga sp. BPS33]
ATCGTGAGCACAACGCCTGCACTCAAAGTCCTGGTGGTCGACGACAGCAACACCATACGCCGCAGTGCCGAGATCTTTCT
CAAGCAGGGTGGGCACGAAGTGCTTCTGGCCGACGACGGGTTCGACGCGCTTGCGAAGATCAACGATTACCAGCCCGACC
TGGTGTTCTGCGACATCCTCATGCCAAGGCTCGATGGCTACCAGACCTGCGCGATCATCAAGCGCAATGCGCGCTTTGCC
AATATTCCCGTGGTGATGCTCTCGTCGAAGGACGGCGTTTTTGACAAGGCGCGTGGCCGCATGGTGGGCTCGCAGGACTA
CCTCACCAAACCTTTCACCAAAGACCAGCTGCTGCAAGCCGTGCAACAGTTTGGCGCCAACCTAACTGGAGCCGTGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1J7W4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

64.348

87.121

0.561
  pilH Synechocystis sp. PCC 6803

40.678

89.394

0.364

Multiple sequence alignment