Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   F7984_RS17415 Genome accession   NZ_CP044545
Coordinates   3604944..3606326 (-) Length   460 a.a.
NCBI ID   WP_308810546.1    Uniprot ID   -
Organism   Pradoshia sp. D12     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3599944..3611326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7984_RS17385 (F7984_17385) flgL 3600223..3601098 (-) 876 WP_140461805.1 flagellar hook-associated protein FlgL -
  F7984_RS17390 (F7984_17390) flgK 3601109..3602713 (-) 1605 WP_140461806.1 flagellar hook-associated protein FlgK -
  F7984_RS17395 (F7984_17395) - 3602735..3603229 (-) 495 WP_066106021.1 flagellar protein FlgN -
  F7984_RS17400 (F7984_17400) flgM 3603290..3603553 (-) 264 WP_066106018.1 flagellar biosynthesis anti-sigma factor FlgM -
  F7984_RS17405 (F7984_17405) - 3603777..3604190 (-) 414 WP_066106015.1 TIGR03826 family flagellar region protein -
  F7984_RS17410 (F7984_17410) - 3604255..3604947 (-) 693 WP_140461807.1 ComF family protein -
  F7984_RS17415 (F7984_17415) comFA 3604944..3606326 (-) 1383 WP_308810546.1 DEAD/DEAH box helicase Machinery gene
  F7984_RS17420 (F7984_17420) - 3606393..3607241 (-) 849 WP_066106009.1 DegV family protein -
  F7984_RS17425 (F7984_17425) - 3607355..3607855 (-) 501 WP_077248102.1 GNAT family N-acetyltransferase -
  F7984_RS17430 (F7984_17430) - 3608016..3608702 (-) 687 WP_066106006.1 response regulator -
  F7984_RS17435 (F7984_17435) - 3608821..3609975 (-) 1155 WP_066106003.1 sensor histidine kinase -
  F7984_RS17440 (F7984_17440) - 3610277..3610909 (+) 633 WP_140461808.1 YigZ family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 51933.24 Da        Isoelectric Point: 7.9269

>NTDB_id=390932 F7984_RS17415 WP_308810546.1 3604944..3606326(-) (comFA) [Pradoshia sp. D12]
MKASRHSTGSSPISLQQLLIGKELLITEIPNELKEQLDLNEQIYSVRGIENGICRRCGNTDSRLFATFPHSACGENCLYC
RHCIMMGRISSCSTLFGWKGENLGWSPELARLRWDGSLSFSQKEASEKIMEAVRNQMDLLIWAVCGAGKTEMIFAGIEEA
LFSGKRVCLATPRTDVILELAPRLRSVFPDIPIVALYGDSQEKQLFAPFVLSTTHQLMRYADAFEVMIIDEVDAFPYSFD
PHLQYAVQKACKKDAAVIYLTATPSKQWQLEFQQGIRNGILLPARFHRHPIPVPTMKWVGNWQSSIQKNKLPNPLLYWLK
TAIECKNPFLIFFPNIALMEKALPLFQGYAPEILSVHAEDSERKDKIMKLRRGEIQGLLTTTILERGVTIPKLNVAVIGA
EDEIFTESALVQIAGRIGRSKDHPRGDCVYFHYGKTNAMLDAIQQINQMNREAVKRGLLD

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=390932 F7984_RS17415 WP_308810546.1 3604944..3606326(-) (comFA) [Pradoshia sp. D12]
GTGAAAGCATCCAGACACTCAACAGGATCCTCACCTATATCTCTGCAACAGCTCCTCATTGGTAAAGAACTCCTCATAAC
TGAAATTCCAAATGAATTAAAGGAACAATTGGATTTAAATGAACAAATTTATTCTGTGAGAGGGATTGAGAATGGTATAT
GCAGACGCTGCGGCAATACGGATTCCCGTTTGTTTGCAACATTCCCCCACAGTGCGTGTGGTGAAAACTGTCTGTATTGC
CGCCATTGTATTATGATGGGCCGAATCAGCTCCTGCTCTACTCTTTTTGGATGGAAGGGGGAAAATCTTGGCTGGAGTCC
TGAGTTAGCTCGGCTTCGTTGGGATGGTTCACTTTCCTTCTCCCAAAAGGAGGCTTCAGAAAAAATCATGGAAGCTGTCC
GAAATCAAATGGATTTACTCATTTGGGCAGTATGCGGAGCCGGGAAGACAGAGATGATCTTTGCCGGTATAGAAGAAGCT
CTTTTCTCAGGCAAAAGGGTTTGCCTGGCGACTCCTCGTACAGATGTTATCCTTGAGCTTGCTCCAAGGCTGCGCAGCGT
ATTTCCAGATATTCCAATCGTAGCCCTATATGGTGACAGTCAAGAAAAACAGCTTTTTGCTCCATTTGTCTTATCGACCA
CTCACCAGCTAATGCGTTATGCCGATGCCTTCGAAGTGATGATTATTGATGAAGTAGATGCGTTCCCTTATTCCTTTGAT
CCTCATCTCCAATATGCGGTTCAAAAGGCGTGTAAGAAAGATGCTGCTGTTATTTATTTGACGGCAACGCCTTCAAAACA
GTGGCAGCTCGAATTTCAACAGGGTATAAGAAATGGAATTCTCCTCCCTGCCCGTTTTCACAGACACCCTATTCCTGTCC
CCACTATGAAATGGGTTGGAAACTGGCAATCATCCATTCAGAAAAATAAACTTCCCAATCCTCTCTTGTATTGGCTCAAA
ACTGCTATCGAATGTAAGAACCCCTTTCTTATTTTTTTCCCGAATATCGCATTAATGGAAAAAGCCCTTCCTCTCTTTCA
AGGCTATGCTCCTGAAATTCTTTCTGTCCATGCAGAGGATTCGGAACGTAAAGATAAAATAATGAAGCTGCGCAGAGGTG
AGATTCAGGGCTTACTGACAACCACGATATTGGAAAGAGGCGTTACGATTCCTAAATTGAATGTAGCGGTGATTGGGGCT
GAGGATGAAATCTTTACCGAGTCAGCACTCGTCCAAATTGCAGGACGGATTGGAAGAAGTAAGGACCATCCTCGCGGTGA
TTGTGTATATTTTCATTATGGAAAAACTAATGCCATGCTTGATGCGATTCAGCAAATCAACCAAATGAATAGAGAAGCTG
TCAAAAGGGGGCTGCTGGATTGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(121-265)

Helicase conserved C-terminal domain (Helicase_C)

(324-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50

98.261

0.491

Multiple sequence alignment