Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | F7984_RS13510 | Genome accession | NZ_CP044545 |
| Coordinates | 2820413..2821474 (-) | Length | 353 a.a. |
| NCBI ID | WP_140462021.1 | Uniprot ID | - |
| Organism | Pradoshia sp. D12 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2815413..2826474
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F7984_RS13470 (F7984_13470) | - | 2815531..2816325 (+) | 795 | WP_140462026.1 | YqhG family protein | - |
| F7984_RS13475 (F7984_13475) | - | 2816739..2816924 (-) | 186 | WP_225983607.1 | YqzE family protein | - |
| F7984_RS13480 (F7984_13480) | - | 2816987..2817490 (-) | 504 | WP_140462025.1 | shikimate kinase | - |
| F7984_RS13485 (F7984_13485) | comGG | 2817508..2817891 (-) | 384 | WP_181162039.1 | competence type IV pilus minor pilin ComGG | - |
| F7984_RS13490 (F7984_13490) | comGF | 2817878..2818324 (-) | 447 | WP_192796851.1 | competence type IV pilus minor pilin ComGF | - |
| F7984_RS19140 | - | 2818302..2818532 (-) | 231 | WP_192796812.1 | hypothetical protein | - |
| F7984_RS13495 (F7984_13495) | comGD | 2818615..2819058 (-) | 444 | WP_066105059.1 | competence type IV pilus minor pilin ComGD | - |
| F7984_RS13500 (F7984_13500) | comGC | 2819061..2819369 (-) | 309 | WP_139892543.1 | competence type IV pilus major pilin ComGC | - |
| F7984_RS13505 (F7984_13505) | comGB | 2819383..2820423 (-) | 1041 | WP_180350004.1 | competence type IV pilus assembly protein ComGB | - |
| F7984_RS13510 (F7984_13510) | comGA | 2820413..2821474 (-) | 1062 | WP_140462021.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| F7984_RS13515 (F7984_13515) | - | 2821816..2822523 (+) | 708 | WP_066105070.1 | helix-turn-helix transcriptional regulator | - |
| F7984_RS13520 (F7984_13520) | - | 2822625..2822867 (+) | 243 | WP_066105073.1 | DUF2626 domain-containing protein | - |
| F7984_RS13525 (F7984_13525) | - | 2822900..2823976 (-) | 1077 | WP_180350005.1 | class I SAM-dependent methyltransferase | - |
| F7984_RS13530 (F7984_13530) | - | 2824141..2824773 (-) | 633 | WP_066105078.1 | MBL fold metallo-hydrolase | - |
| F7984_RS13535 (F7984_13535) | - | 2824994..2825167 (+) | 174 | WP_066105081.1 | DUF2759 domain-containing protein | - |
| F7984_RS13540 (F7984_13540) | - | 2825248..2826438 (-) | 1191 | WP_181162038.1 | M14 family metallocarboxypeptidase | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 39899.19 Da Isoelectric Point: 8.1048
>NTDB_id=390916 F7984_RS13510 WP_140462021.1 2820413..2821474(-) (comGA) [Pradoshia sp. D12]
MLTIDKLAEKVVTEAVKFKASDIHIVPQRKKTHLYYRIHNRLFSEGSYQRDRAQRLISHFKFMAGMDIGEKRRPQSGALT
MFVSNKWIGLRLSTLPTPYSESLVIRIIPSLQTLPIEEISLFPKMSTTLISMLKHSHGLMIICGPTGSGKTTTLYSMLHH
AKNTVNRNIITLEDPVEHQSDDAIQVQINEKAGISYSVGLKAALRHDPDIIMIGEIRDAETARIAVRAALTGHLILTTMH
ASDVLGAVRRLLEFGIDKEEAKQTLLGVTSQRLLELHCPFCKGECSPYCLMEKSRGRVSVHEMIYGNELAKVWAEMEGDD
VNFHYPELSSLISKAVAYGFVNQKEYERWVHEE
MLTIDKLAEKVVTEAVKFKASDIHIVPQRKKTHLYYRIHNRLFSEGSYQRDRAQRLISHFKFMAGMDIGEKRRPQSGALT
MFVSNKWIGLRLSTLPTPYSESLVIRIIPSLQTLPIEEISLFPKMSTTLISMLKHSHGLMIICGPTGSGKTTTLYSMLHH
AKNTVNRNIITLEDPVEHQSDDAIQVQINEKAGISYSVGLKAALRHDPDIIMIGEIRDAETARIAVRAALTGHLILTTMH
ASDVLGAVRRLLEFGIDKEEAKQTLLGVTSQRLLELHCPFCKGECSPYCLMEKSRGRVSVHEMIYGNELAKVWAEMEGDD
VNFHYPELSSLISKAVAYGFVNQKEYERWVHEE
Nucleotide
Download Length: 1062 bp
>NTDB_id=390916 F7984_RS13510 WP_140462021.1 2820413..2821474(-) (comGA) [Pradoshia sp. D12]
TTGCTCACCATCGATAAGTTAGCTGAAAAAGTTGTAACAGAAGCAGTAAAATTCAAAGCCTCAGATATCCACATTGTTCC
CCAACGCAAGAAAACCCATCTTTACTATCGGATTCACAATCGCTTATTTTCAGAAGGCAGTTACCAAAGAGACAGGGCCC
AACGACTCATCTCTCATTTTAAATTTATGGCCGGCATGGATATAGGAGAAAAAAGACGTCCTCAGTCAGGGGCCTTAACG
ATGTTTGTTTCAAATAAATGGATTGGTCTCCGATTATCCACCTTGCCTACCCCATACTCTGAATCTCTCGTCATTCGTAT
TATTCCAAGTTTACAAACTCTCCCAATCGAAGAAATCTCCTTATTTCCAAAAATGTCAACTACGTTAATTTCCATGCTTA
AACATTCCCATGGATTAATGATCATCTGTGGACCGACTGGAAGTGGTAAAACTACAACTTTATATTCCATGCTCCATCAT
GCCAAAAATACCGTTAACCGAAATATTATTACACTGGAAGATCCTGTTGAACATCAGTCCGATGATGCCATTCAAGTCCA
GATTAATGAAAAAGCCGGTATCAGTTATTCAGTAGGCTTGAAAGCTGCCCTGCGCCACGATCCCGATATTATCATGATTG
GAGAAATCAGGGATGCTGAAACGGCCAGAATAGCGGTGCGCGCCGCTTTAACAGGCCACTTAATCTTAACTACGATGCAT
GCCAGTGATGTATTGGGTGCAGTTAGAAGGCTTTTGGAATTTGGGATAGACAAGGAGGAGGCAAAGCAAACTCTTTTAGG
TGTAACCTCCCAAAGATTATTGGAATTGCACTGTCCTTTTTGTAAGGGTGAATGCTCACCGTACTGCCTTATGGAAAAGA
GCAGAGGGCGGGTAAGTGTGCATGAAATGATTTATGGCAATGAATTGGCGAAGGTTTGGGCAGAGATGGAGGGAGATGAT
GTGAACTTTCATTATCCGGAATTATCTTCTCTCATCAGCAAGGCTGTTGCCTATGGATTTGTGAATCAAAAAGAGTATGA
GAGGTGGGTGCATGAGGAGTAA
TTGCTCACCATCGATAAGTTAGCTGAAAAAGTTGTAACAGAAGCAGTAAAATTCAAAGCCTCAGATATCCACATTGTTCC
CCAACGCAAGAAAACCCATCTTTACTATCGGATTCACAATCGCTTATTTTCAGAAGGCAGTTACCAAAGAGACAGGGCCC
AACGACTCATCTCTCATTTTAAATTTATGGCCGGCATGGATATAGGAGAAAAAAGACGTCCTCAGTCAGGGGCCTTAACG
ATGTTTGTTTCAAATAAATGGATTGGTCTCCGATTATCCACCTTGCCTACCCCATACTCTGAATCTCTCGTCATTCGTAT
TATTCCAAGTTTACAAACTCTCCCAATCGAAGAAATCTCCTTATTTCCAAAAATGTCAACTACGTTAATTTCCATGCTTA
AACATTCCCATGGATTAATGATCATCTGTGGACCGACTGGAAGTGGTAAAACTACAACTTTATATTCCATGCTCCATCAT
GCCAAAAATACCGTTAACCGAAATATTATTACACTGGAAGATCCTGTTGAACATCAGTCCGATGATGCCATTCAAGTCCA
GATTAATGAAAAAGCCGGTATCAGTTATTCAGTAGGCTTGAAAGCTGCCCTGCGCCACGATCCCGATATTATCATGATTG
GAGAAATCAGGGATGCTGAAACGGCCAGAATAGCGGTGCGCGCCGCTTTAACAGGCCACTTAATCTTAACTACGATGCAT
GCCAGTGATGTATTGGGTGCAGTTAGAAGGCTTTTGGAATTTGGGATAGACAAGGAGGAGGCAAAGCAAACTCTTTTAGG
TGTAACCTCCCAAAGATTATTGGAATTGCACTGTCCTTTTTGTAAGGGTGAATGCTCACCGTACTGCCTTATGGAAAAGA
GCAGAGGGCGGGTAAGTGTGCATGAAATGATTTATGGCAATGAATTGGCGAAGGTTTGGGCAGAGATGGAGGGAGATGAT
GTGAACTTTCATTATCCGGAATTATCTTCTCTCATCAGCAAGGCTGTTGCCTATGGATTTGTGAATCAAAAAGAGTATGA
GAGGTGGGTGCATGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
51.13 |
100 |
0.513 |
| pilB | Haemophilus influenzae 86-028NP |
36.963 |
98.867 |
0.365 |