Detailed information NTG0390765

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: F7R97_RS18960
• Genome accession: NZ_CP044517
• Coordinates: 344937..345797 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152269.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain 31FS3-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 339937..350797

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F7R97_RS01600 (F7R97_01615)	-	340828..342138 (+)	1311	WP_140951865.1	tetratricopeptide repeat protein	-
F7R97_RS01605 (F7R97_01620)	-	342215..342541 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
F7R97_RS01610 (F7R97_01625)	rlmB	342643..343392 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
F7R97_RS01615 (F7R97_01630)	-	343428..344342 (+)	915	WP_000075014.1	DMT family transporter	-
F7R97_RS01620 (F7R97_01635)	coaE	344339..344935 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
F7R97_RS18960 (F7R97_01640)	pilD	344937..345797 (-)	861	WP_001152269.1	prepilin peptidase	Machinery gene
F7R97_RS01630 (F7R97_01645)	pilC	345797..347023 (-)	1227	WP_179007023.1	type II secretion system F family protein	Machinery gene
F7R97_RS01635 (F7R97_01650)	pilB	347053..348765 (-)	1713	WP_001274989.1	type IV-A pilus assembly ATPase PilB	Machinery gene
F7R97_RS01640 (F7R97_01655)	tpiA	349056..349850 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
F7R97_RS01645 (F7R97_01660)	secG	349863..350192 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32029.45 Da
• Isoelectric Point: 6.6663

>NTDB_id=390765 F7R97_RS18960 WP_001152269.1 344937..345797(-) (pilD) [Acinetobacter baumannii strain 31FS3-2]
MQDIIAYFIQNLTALYIAVALMSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IPWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=390765 F7R97_RS18960 WP_001152269.1 344937..345797(-) (pilD) [Acinetobacter baumannii strain 31FS3-2]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCATGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCCTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437