Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   F7R97_RS16850 Genome accession   NZ_CP044517
Coordinates   3531341..3532159 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 31FS3-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3526341..3537159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7R97_RS16835 (F7R97_17020) pilE 3526558..3526983 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  F7R97_RS16840 (F7R97_17025) pilY2 3526980..3527462 (-) 483 WP_078202465.1 type IV pilin protein Machinery gene
  F7R97_RS16845 (F7R97_17030) pilY1 3527475..3531329 (-) 3855 WP_179007487.1 PilC/PilY family type IV pilus protein Machinery gene
  F7R97_RS16850 (F7R97_17035) pilX 3531341..3532159 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  F7R97_RS16855 (F7R97_17040) pilW 3532156..3533157 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  F7R97_RS16860 (F7R97_17045) pilV 3533158..3533718 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  F7R97_RS16865 (F7R97_17050) fimU 3533712..3534185 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  F7R97_RS16870 (F7R97_17055) ispH 3534355..3535305 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  F7R97_RS16875 (F7R97_17060) gmk 3535428..3536057 (+) 630 WP_000015937.1 guanylate kinase -
  F7R97_RS16880 (F7R97_17065) rpoZ 3536130..3536408 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  F7R97_RS16885 (F7R97_17070) - 3536447..3536577 (+) 131 Protein_3310 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=390754 F7R97_RS16850 WP_000149374.1 3531341..3532159(-) (pilX) [Acinetobacter baumannii strain 31FS3-2]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=390754 F7R97_RS16850 WP_000149374.1 3531341..3532159(-) (pilX) [Acinetobacter baumannii strain 31FS3-2]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGCGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGCATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment