Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   F7R97_RS16835 Genome accession   NZ_CP044517
Coordinates   3526558..3526983 (-) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii strain 31FS3-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3521558..3531983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7R97_RS16805 (F7R97_16990) - 3522091..3523122 (+) 1032 WP_133239105.1 lipase secretion chaperone -
  F7R97_RS16810 (F7R97_16995) - 3523237..3524178 (+) 942 WP_140951738.1 lipase family alpha/beta hydrolase -
  F7R97_RS16815 (F7R97_17000) rplS 3524230..3524598 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  F7R97_RS16820 (F7R97_17005) trmD 3524806..3525546 (-) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  F7R97_RS16825 (F7R97_17010) rimM 3525592..3526140 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  F7R97_RS16830 (F7R97_17015) rpsP 3526160..3526411 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  F7R97_RS16835 (F7R97_17020) pilE 3526558..3526983 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  F7R97_RS16840 (F7R97_17025) pilY2 3526980..3527462 (-) 483 WP_078202465.1 type IV pilin protein Machinery gene
  F7R97_RS16845 (F7R97_17030) pilY1 3527475..3531329 (-) 3855 WP_179007487.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=390751 F7R97_RS16835 WP_000788342.1 3526558..3526983(-) (pilE) [Acinetobacter baumannii strain 31FS3-2]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=390751 F7R97_RS16835 WP_000788342.1 3526558..3526983(-) (pilE) [Acinetobacter baumannii strain 31FS3-2]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518

Multiple sequence alignment