Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NLA_RS07545 Genome accession   NC_014752
Coordinates   1580015..1581394 (-) Length   459 a.a.
NCBI ID   WP_118786961.1    Uniprot ID   -
Organism   Neisseria lactamica 020-06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1575015..1586394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLA_RS07530 (NLA_14450) recB 1575123..1578737 (+) 3615 WP_013449229.1 exodeoxyribonuclease V subunit beta Machinery gene
  NLA_RS07535 (NLA_14460) - 1578776..1579135 (+) 360 WP_013449230.1 rhodanese-like domain-containing protein -
  NLA_RS07540 (NLA_14470) - 1579260..1579739 (+) 480 WP_013449231.1 DUF302 domain-containing protein -
  NLA_RS07545 (NLA_14480) radA 1580015..1581394 (-) 1380 WP_118786961.1 DNA repair protein RadA Machinery gene
  NLA_RS07550 (NLA_14490) hemE 1581584..1582648 (-) 1065 WP_013449233.1 uroporphyrinogen decarboxylase -
  NLA_RS07555 (NLA_14500) - 1582802..1583242 (-) 441 WP_003710937.1 hypothetical protein -
  NLA_RS07560 (NLA_14510) - 1583275..1584498 (-) 1224 WP_003710936.1 heme biosynthesis protein HemY -
  NLA_RS07565 (NLA_14520) - 1584495..1585856 (-) 1362 WP_013449235.1 uroporphyrinogen-III C-methyltransferase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49479.97 Da        Isoelectric Point: 7.6110

>NTDB_id=39073 NLA_RS07545 WP_118786961.1 1580015..1581394(-) (radA) [Neisseria lactamica 020-06]
MAKTLKTLYQCTGCGGTSPKWQGKCPHCGEWNTLQESLAAPDPKNARFQSWAADTSTVQSLSTVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHRPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDICRDSSE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=39073 NLA_RS07545 WP_118786961.1 1580015..1581394(-) (radA) [Neisseria lactamica 020-06]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGGATGCGGCGGCACTTCCCCGAAATGGCAAGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCTTAGCCGCGCCCGATCCGAAAAACGCCCGTTTCCAATCTTGGGCGGCGG
ATACCTCGACCGTCCAGTCCCTCTCCACCGTGACCGCCACCGAAGTGCCGCGCAATCCGACCGGTATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGCGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAGGAATCCGCCCAACAGGTCGCCC
TGCGCGCGCAACGTTTGGAACTGCCCACAGAAGGCGTGAACCTGCTTGCCGAAATCCGGATGGAAGCGATTCAGACGGCA
TTGAAACAACATCGGCCCGAAGTCGTCGTCATCGACTCCATCCAAACCATGTATTCCGACCAAATCACCTCCGCCCCCGG
CTCTGTATCGCAGGTGCGCGAATGCGCCGCCCAACTGACGCGTATGGCGAAACAAATGGGCATCGCCATGATTCTGGTCG
GACACGTAACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAGCATATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAGCATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGCGCGGCAAACGAATTGGGCGTATTCGCCAT
GACCGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCCGCCATTTTCCTCGCCAGCTACCGCGACGATACGCCCGGCTCGT
GCGTTTTGGTTACGCAAGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCGCACGGCTTCACG
CCCAAACGCCTTACCGTCGGACTGGAACAAAACCGCCTCGCGATGCTGCTCGCCGTGTTAAACCGCCACGGCGGCATCGC
CTGTTTCGATCAGGATGTATTTTTAAACGCCGTCGGCGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCGGTCATCC
TTGCGATGCTTTCCAGCTTCCGCAACCGCCCTATGCCTGAAAAAACCGTTGTTTTCGGCGAAATCGGCTTAAGCGGCGAA
GTCCGCCCCGTCGCGCGTGGACAAGAGCGGCTCAAAGAAGCGGAAAAGCTCGGCTTCAAACGCGCCATCGTCCCCAAAGC
CAATATGCCGCGCAACGCCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATCGATATTT
GCCGCGACAGCAGTGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.33

99.129

0.499
  radA Streptococcus mitis NCTC 12261

46.711

99.346

0.464
  radA Streptococcus pneumoniae Rx1

46.903

98.475

0.462
  radA Streptococcus pneumoniae D39

46.903

98.475

0.462
  radA Streptococcus pneumoniae R6

46.903

98.475

0.462
  radA Streptococcus pneumoniae TIGR4

46.903

98.475

0.462
  radA Streptococcus mitis SK321

46.785

98.257

0.46

Multiple sequence alignment