Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   NLA_RS07530 Genome accession   NC_014752
Coordinates   1575123..1578737 (+) Length   1204 a.a.
NCBI ID   WP_013449229.1    Uniprot ID   E4ZE75
Organism   Neisseria lactamica 020-06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1570123..1583737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLA_RS07505 (NLA_14400) - 1571402..1572157 (-) 756 WP_013449225.1 amino acid ABC transporter ATP-binding protein -
  NLA_RS07510 (NLA_14410) - 1572167..1572883 (-) 717 WP_002222717.1 amino acid ABC transporter permease -
  NLA_RS07515 (NLA_14420) - 1572873..1573700 (-) 828 WP_013449226.1 amino acid ABC transporter substrate-binding protein -
  NLA_RS07525 (NLA_14440) - 1573982..1574890 (+) 909 WP_013449228.1 Dyp-type peroxidase -
  NLA_RS07530 (NLA_14450) recB 1575123..1578737 (+) 3615 WP_013449229.1 exodeoxyribonuclease V subunit beta Machinery gene
  NLA_RS07535 (NLA_14460) - 1578776..1579135 (+) 360 WP_013449230.1 rhodanese-like domain-containing protein -
  NLA_RS07540 (NLA_14470) - 1579260..1579739 (+) 480 WP_013449231.1 DUF302 domain-containing protein -
  NLA_RS07545 (NLA_14480) radA 1580015..1581394 (-) 1380 WP_118786961.1 DNA repair protein RadA Machinery gene
  NLA_RS07550 (NLA_14490) hemE 1581584..1582648 (-) 1065 WP_013449233.1 uroporphyrinogen decarboxylase -
  NLA_RS07555 (NLA_14500) - 1582802..1583242 (-) 441 WP_003710937.1 hypothetical protein -

Sequence

Protein


Download         Length: 1204 a.a.        Molecular weight: 134734.09 Da        Isoelectric Point: 5.3305

>NTDB_id=39072 NLA_RS07530 WP_013449229.1 1575123..1578737(+) (recB) [Neisseria lactamica 020-06]
MSASIRAFDPLTVPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE
SKEIAKLGDDTLSDGTAAYCAEHHEGDTFLPELLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
QAPFDVELTEEDGDRLLVPAQDFWRERVSGDPVLAALAFKRKAVPQTVLAQIRAYLSRPYLNFRRPQTDLPQARGAALSS
WQNICGNLAELKETFWRIHPLLNGNSYRKNSFAELFDALEQKALSTDLPFLEAKLHERLLKLSSDKLEAGLKKGKTPDAA
VFAELQKLADFGRDLDALEEAEEATMIRLQLDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAEILARAVAEN
WETALIDEFQDTDPLQYEIFQKIFIAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAGDAQHRYTLATNYRSHSALIGSIG
ALFRLKERPFVLENIGYSEVGAARAESRLSPERPAVQVRWLHENDNEKTNKDVLRRRAADYCADEIAHALNEAAGGRLNF
KGCPLQSGDIAVLVRTHNEAVMVSAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSSIFGYDA
QQLHDFNQNESEILHWAESARNALDNWNQYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAA
LHKWLRDQISLAGNNGGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ
LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQDSRETVRQIYDREKDGIAMLKRNW
QRLTDNAPSGTDFAFTEDAPPPAAYRGNAGQTAEFAANSIPERRFRFVRHTSFTALSRQSQTPDDGEEDACPSLDAAETS
VPAMPSETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLITDKLKKYGFEEIWLPAVAEMAEACRKTPLT
GAYCLSDIPPEYRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETLDFHTVNGFLNGFVDMICQDPDGNICVI
DYKSNHLGTDASAYTRQAMDEAVAHHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRGLDGKGGGVWRWDIDAAAL
EQIK

Nucleotide


Download         Length: 3615 bp        

>NTDB_id=39072 NLA_RS07530 WP_013449229.1 1575123..1578737(+) (recB) [Neisseria lactamica 020-06]
ATGTCTGCAAGCATCCGAGCATTCGACCCGCTGACCGTCCCCATTTCCGGCACCAACCTGATTGAGGCCTCTGCCGGCAC
CGGCAAAACCTACGGCATCGCCGCCCTGTTTACACGTTTGATCGTATTAGAACAAAAAAGCGTCGAGCGCGTATTGGTCG
TTACCTTCACCAAAGCCGCCACCGCCGAGCTGAAAACACGCCTGCGCGCGCGTTTGGACGATGTGTTACAAGTTTTAGAA
AGCAAAGAAATTGCCAAACTTGGAGACGACACGCTTTCAGACGGCACTGCCGCCTACTGCGCCGAACACCACGAAGGCGA
CACCTTCCTGCCCGAACTCTTAAAACAGGCTTTGCAAAAAGAGGGCCGGACGCGTCTGATTGTCCGCCTCAAAGCCGCCA
TCGGGCAATTCGACAACGCCGCCATCTACACCATCCACGGCTTCTGCCAGCGCATCCTGCGCGACTACGCCTTCCTGTGC
CAAGCACCGTTCGATGTCGAACTGACCGAAGAAGACGGCGACCGCCTGCTTGTCCCGGCGCAAGATTTTTGGCGGGAACG
CGTCAGCGGCGACCCTGTGCTTGCCGCATTGGCGTTTAAACGCAAAGCTGTGCCGCAAACCGTCCTTGCCCAAATCCGCG
CCTACCTGTCCCGCCCGTACCTGAATTTCCGCCGTCCGCAAACCGATTTGCCGCAAGCCCGGGGCGCCGCTTTGTCAAGC
TGGCAAAACATTTGCGGAAATCTGGCTGAATTAAAAGAAACTTTTTGGCGCATCCACCCCCTTTTAAACGGCAATTCATA
TCGGAAAAACAGTTTTGCCGAACTGTTTGACGCATTGGAACAAAAAGCCCTGTCGACGGATTTGCCCTTTTTGGAGGCAA
AGCTGCACGAACGGCTCTTGAAACTCTCATCCGACAAACTCGAAGCCGGACTGAAAAAAGGCAAAACGCCCGATGCGGCA
GTATTTGCCGAATTGCAGAAACTGGCAGACTTCGGGCGTGATTTGGACGCACTCGAAGAAGCGGAAGAAGCAACAATGAT
CCGGCTGCAACTGGATTTAATCGGATACCTCAACCGCAGCCTTGCCGAGATGAAAAAATCGCGCCGCGAACGCGGTTTCG
ACGACCTGCTTCTCGATGTCCACACCGCGCTGACCGACAATCCGCACGCCGAAATCCTCGCCCGCGCCGTTGCCGAAAAC
TGGGAAACCGCGCTGATCGACGAGTTCCAAGACACCGACCCGCTGCAATACGAAATCTTCCAAAAAATCTTCATCGCCCA
AAACCGCCCGCTGTTTCTGGTCGGCGATCCCAAACAGGCGATTTACAGCTTTCGCGGAGCGGACATTTACGCCTACCTGC
AAGCCGCCGGAGACGCGCAACACCGCTACACGCTCGCCACCAACTACCGCAGCCATTCCGCGCTTATCGGCAGCATAGGC
GCGCTGTTCCGCCTCAAAGAACGCCCGTTCGTTTTGGAAAACATCGGCTATTCGGAAGTCGGTGCGGCGCGTGCCGAAAG
CAGGTTGTCCCCCGAACGTCCTGCAGTACAGGTTCGTTGGCTGCACGAAAACGACAATGAAAAAACCAACAAAGACGTTT
TGCGCCGCCGTGCCGCCGACTATTGCGCCGACGAAATCGCCCACGCGCTCAACGAAGCCGCCGGAGGCCGTCTGAATTTC
AAAGGCTGCCCGTTGCAGTCGGGCGATATTGCCGTGCTGGTCCGCACGCACAACGAGGCGGTGATGGTTTCCGCCGCCCT
GAAAAAACGACAGGTGCAAAGCGTCCTGCTTTCACGCGAATCCGTGTTCGCCTCGCCCGAAGCCGCCGCCCTGTCCGCAC
TCATCGGCTTCTGGCTCGAACCGCGCCGCGCCGGAACGCTGCGCTTTGTCCTGACAAGCAGCATATTCGGTTATGACGCG
CAGCAATTGCACGACTTCAACCAAAACGAAAGCGAGATTTTGCATTGGGCAGAATCTGCCCGCAACGCGCTCGACAACTG
GAATCAATACGGCATTTTTGCCGCTATGCAGCAGTTTTCCCAAACACACGGCATCGAAACGCGCCTCTTAAGCCGGAACA
ACGGGCGCAGCCTGACCAATTATTTCCAACTGCTCGAACTGCTTGCCGCCGAAGACGCGCAAAACCGCAACCCCGCCGCG
CTGCACAAATGGCTGCGCGACCAAATCAGCCTTGCCGGCAACAACGGCGGCGACAACCGCGCCATCCGTCTGGAAAGCGA
CGAAGATTTGGTCAAAATCGTTACTATGCACGCCTCGAAAGGTTTGCAGTATCCGCTGGTGTACTGCCCGTTTGCGTGGG
ACGCGCAAGATACCGGGCCGTCCGACTGGCAAATCCTCCACCAAAGCGCAAACCGAACCGAACTGTTGGCAAAGGCGCAA
CTGTCGGAAGACGAACAGAAGCAATACGCCGATGAGGAAATGGCGGAACGCCTGCGCCTGCTTTATGTCGCGCTGACGCG
TGCCGAGGAACAGCTCAACATCTACGCCGCCTATTCTTCCGATACCGCCGACAACCCCCTCGCCTACCTGATTGAAGGCT
TGCCGCAAGACAGCCGCGAAACCGTCCGCCAAATCTATGACCGGGAAAAGGACGGCATCGCGATGCTCAAACGCAACTGG
CAGCGTTTGACGGACAACGCCCCTTCCGGCACGGATTTCGCCTTCACAGAAGATGCGCCGCCCCCTGCCGCCTATCGCGG
CAACGCCGGTCAAACCGCCGAATTTGCCGCAAACAGCATTCCCGAACGCAGATTCCGATTTGTCCGCCACACCAGCTTTA
CCGCTTTAAGCCGCCAAAGCCAAACGCCCGACGACGGCGAAGAAGATGCCTGCCCGTCCTTGGATGCCGCCGAAACCTCG
GTGCCGGCGATGCCGTCTGAAACGCCGACGGCTTCAGACGGCATATCGATACACGACTTTCCGAAAGGCACGCAGGCGGG
GCTGTGCCTGCACGAAATTCTTGAAGATTTCAAATTCGGACAAGCAGCCGCCGGACAGGAAACCCTCATCACCGACAAGC
TGAAAAAATACGGATTTGAAGAAATATGGCTGCCTGCCGTTGCCGAAATGGCGGAAGCCTGCCGCAAAACGCCGCTGACG
GGGGCATACTGCCTGTCTGACATTCCGCCCGAGTACCGCTGTCCCGAAATGGGCTTTACCCTCCACACCGAAGACTTCGG
CCTCAAACGGCTGCGCGACTGGTTTGCCCGCGACGACATCAGGCTGCCCGAAGTCTGCCGTGCCGCTGCCGAAACGCTCG
ACTTCCACACCGTCAACGGCTTTTTAAACGGCTTTGTCGATATGATCTGCCAAGACCCCGACGGCAATATCTGCGTCATC
GACTACAAATCAAACCACCTCGGCACGGATGCATCCGCCTACACGCGGCAGGCGATGGACGAAGCCGTCGCGCACCACCA
CTATTACCTTCAGGCACTGATTTACGCCGTTGCCGCCGCGCGCTACTTCAAACTGCGCGGACAACCGCCCGCCGCCGTTT
CCGTCCGCTACCTGTTTTTGCGCGGATTGGATGGCAAAGGCGGCGGCGTTTGGCGTTGGGACATAGATGCCGCCGCTTTG
GAACAGATAAAATAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1068-1182)

UvrD-like helicase C-terminal domain (UvrD_C)

(463-651)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-458)

UvrD-like helicase C-terminal domain (UvrD_C)

(744-835)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4ZE75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

92.027

100

0.92

Multiple sequence alignment