Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   NLA_RS05395 Genome accession   NC_014752
Coordinates   1095831..1097576 (-) Length   581 a.a.
NCBI ID   WP_013448919.1    Uniprot ID   E4ZD31
Organism   Neisseria lactamica 020-06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1090831..1102576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLA_RS05380 (NLA_10360) - 1091313..1091582 (-) 270 WP_003710331.1 HU family DNA-binding protein -
  NLA_RS05385 (NLA_10370) lon 1091766..1094216 (-) 2451 WP_003714125.1 endopeptidase La -
  NLA_RS05390 (NLA_10380) - 1094700..1095803 (+) 1104 WP_042508193.1 methyltransferase -
  NLA_RS05395 (NLA_10390) recD 1095831..1097576 (-) 1746 WP_013448919.1 exodeoxyribonuclease V subunit alpha Machinery gene
  NLA_RS05400 (NLA_10400) lolD 1097643..1098338 (-) 696 WP_013448920.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NLA_RS05405 (NLA_10410) - 1098331..1099578 (-) 1248 WP_013448921.1 lipoprotein-releasing ABC transporter permease subunit -
  NLA_RS05410 (NLA_10420) - 1099802..1100080 (+) 279 WP_003709976.1 hypothetical protein -
  NLA_RS05415 (NLA_10430) recR 1100136..1100753 (-) 618 WP_042508194.1 recombination mediator RecR -
  NLA_RS05420 (NLA_10440) - 1100820..1102358 (-) 1539 WP_013448924.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62846.43 Da        Isoelectric Point: 6.1268

>NTDB_id=39060 NLA_RS05395 WP_013448919.1 1095831..1097576(-) (recD) [Neisseria lactamica 020-06]
MERQTDEFAQAAARAAIRFLEHYAGSGDEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPETVRRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPFDVL
VIDEASMLDTALMLQLLKAVKTGVRVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLGGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRVHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCRHVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFPDTDG
FKKVAVSCLPDFEPAFALTVHKSQGSEYREVWLLPSSAGSSDDADDALSGLSRGLLYTAITRAREKFVFFGGEEAFRQAA
ATVKARQTALGSMLGRVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=39060 NLA_RS05395 WP_013448919.1 1095831..1097576(-) (recD) [Neisseria lactamica 020-06]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACACTATGCGGGTTCTGG
CGACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAGAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGGCACATCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGACCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCTATGCTGGATACGGCATTGATGTTGCAACTTTTAAAGGCGGTCAAAACCGGTGTGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTTCCGTCTGTCGGAATCGGGGCAGTGTTATCTGTCTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGGCGGCTTCCTTCCTGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGTGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATATGCGGGCATT
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCCGCCATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCATATTTTGCCGGAGAGCCGATTATGATCAGGCAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGACAGGGCAGCCTTGCCGCCTATTTCCCCGATACGGACGGA
TTTAAAAAGGTTGCGGTAAGCTGCCTGCCCGATTTCGAACCCGCTTTCGCGCTGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGTGAAGTTTGGCTGCTGCCGTCCTCCGCCGGCAGTTCGGACGACGCGGACGACGCGCTTTCGGGCTTGAGCAGAG
GGCTGCTTTACACAGCCATTACCCGCGCGAGGGAAAAGTTCGTATTTTTCGGCGGGGAAGAAGCCTTCCGGCAAGCCGCC
GCCACCGTCAAAGCGCGTCAGACGGCATTGGGCAGTATGCTTGGGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)

AAA domain (AAA_30)

(125-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4ZD31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

92.771

100

0.928

Multiple sequence alignment