Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   F8M43_RS12605 Genome accession   NZ_CP044498
Coordinates   2435722..2436057 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain ms-2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2430722..2441057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS12585 gcvT 2431315..2432403 (-) 1089 WP_015714248.1 glycine cleavage system aminomethyltransferase GcvT -
  F8M43_RS12590 hepAA 2432844..2434517 (+) 1674 WP_029726726.1 SNF2-related protein -
  F8M43_RS12595 yqhG 2434538..2435332 (+) 795 WP_015714249.1 YqhG family protein -
  F8M43_RS12600 sinI 2435515..2435688 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  F8M43_RS12605 sinR 2435722..2436057 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  F8M43_RS12610 tasA 2436150..2436935 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  F8M43_RS12615 sipW 2436999..2437571 (-) 573 WP_072692741.1 signal peptidase I SipW -
  F8M43_RS12620 tapA 2437555..2438316 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  F8M43_RS12625 yqzG 2438587..2438913 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  F8M43_RS12630 spoIITA 2438955..2439134 (-) 180 WP_029726723.1 YqzE family protein -
  F8M43_RS12635 comGG 2439206..2439580 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  F8M43_RS12640 comGF 2439581..2439964 (-) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  F8M43_RS12645 comGE 2439990..2440337 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  F8M43_RS12650 comGD 2440321..2440752 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  F8M43_RS12655 comGC 2440742..2441038 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=390563 F8M43_RS12605 WP_003226345.1 2435722..2436057(+) (sinR) [Bacillus subtilis strain ms-2]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=390563 F8M43_RS12605 WP_003226345.1 2435722..2436057(+) (sinR) [Bacillus subtilis strain ms-2]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
ACAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment