Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   F8B64_RS00275 Genome accession   NZ_CP044497
Coordinates   56394..57110 (-) Length   238 a.a.
NCBI ID   WP_012055311.1    Uniprot ID   -
Organism   Haemophilus influenzae strain PittGG     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51394..62110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8B64_RS00255 (F8B64_00255) nrdR 51486..51935 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  F8B64_RS00260 (F8B64_00260) recC 51990..55370 (-) 3381 WP_012055314.1 exodeoxyribonuclease V subunit gamma -
  F8B64_RS00265 (F8B64_00265) comQ 55416..55703 (-) 288 WP_012055313.1 DUF5374 domain-containing protein Machinery gene
  F8B64_RS00270 (F8B64_00270) comP 55696..56379 (-) 684 WP_012055312.1 DUF2572 family protein Machinery gene
  F8B64_RS00275 (F8B64_00275) comO 56394..57110 (-) 717 WP_012055311.1 type II secretion system protein J Machinery gene
  F8B64_RS00280 (F8B64_00280) comN 57110..57622 (-) 513 WP_005651545.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  F8B64_RS00285 (F8B64_00285) suhB 57822..58625 (+) 804 WP_012055310.1 inositol-1-monophosphatase -
  F8B64_RS00290 (F8B64_00290) nrfE 58733..60640 (+) 1908 WP_012055309.1 heme lyase NrfEFG subunit NrfE -
  F8B64_RS00295 (F8B64_00295) - 60637..61167 (+) 531 WP_041174822.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26745.09 Da        Isoelectric Point: 9.5508

>NTDB_id=390492 F8B64_RS00275 WP_012055311.1 56394..57110(-) (comO) [Haemophilus influenzae strain PittGG]
MMKVLLKGQTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCVGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=390492 F8B64_RS00275 WP_012055311.1 56394..57110(-) (comO) [Haemophilus influenzae strain PittGG]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATGTTATTACATTTAAAGTTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTGTTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACCTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.16

100

0.992

Multiple sequence alignment