Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HKM25_RS11725 Genome accession   NZ_CP053210
Coordinates   1409145..1409867 (-) Length   240 a.a.
NCBI ID   WP_001833285.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 6A-10     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1404145..1414867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKM25_RS07075 (HKM25_1452) - 1406719..1407885 (-) 1167 WP_000521362.1 MalY/PatB family protein -
  HKM25_RS07080 (HKM25_1453) - 1407893..1408987 (-) 1095 WP_000031964.1 cystathionine gamma-synthase -
  HKM25_RS11725 rcrP 1409145..1409867 (-) 723 WP_001833285.1 ATP-binding cassette domain-containing protein Regulator
  HKM25_RS11730 - 1410054..1410827 (-) 774 Protein_1417 ABC transporter ATP-binding protein -
  HKM25_RS07090 (HKM25_1455) amiA 1410999..1412957 (-) 1959 WP_000748881.1 peptide ABC transporter substrate-binding protein Regulator
  HKM25_RS07095 (HKM25_1456) - 1413161..1414783 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27166.04 Da        Isoelectric Point: 5.2119

>NTDB_id=390480 HKM25_RS11725 WP_001833285.1 1409145..1409867(-) (rcrP) [Streptococcus pneumoniae strain 6A-10]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRLLSGGRSQRLQIARAYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHRLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=390480 HKM25_RS11725 WP_001833285.1 1409145..1409867(-) (rcrP) [Streptococcus pneumoniae strain 6A-10]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGGCCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGACTCTTGTCAGGGGGGCGAAGCCAAAGACTTCAAATAGCTAGAGCCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTACTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.82

99.583

0.367
  rcrQ Streptococcus mutans UA159

36.25

100

0.363
  comA Streptococcus mitis SK321

37.179

97.5

0.362