Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   NMBM01240355_RS06545 Genome accession   NC_017517
Coordinates   1239727..1240404 (-) Length   225 a.a.
NCBI ID   WP_002213447.1    Uniprot ID   Q9JZI3
Organism   Neisseria meningitidis M01-240355     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1234727..1245404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240355_RS06530 (NMBM01240355_1186) hflX 1236313..1237491 (-) 1179 WP_014582033.1 GTPase HflX -
  NMBM01240355_RS06535 (NMBM01240355_1187) - 1237496..1238776 (-) 1281 WP_014582034.1 CAP domain-containing protein -
  NMBM01240355_RS16235 - 1238778..1238906 (+) 129 WP_009347251.1 hypothetical protein -
  NMBM01240355_RS06540 (NMBM01240355_1188) - 1238929..1239654 (-) 726 WP_002213448.1 epoxyqueuosine reductase QueH -
  NMBM01240355_RS06545 (NMBM01240355_1189) ysxA/radC 1239727..1240404 (-) 678 WP_002213447.1 DNA repair protein RadC Machinery gene
  NMBM01240355_RS06550 (NMBM01240355_1190) gshA 1240527..1241876 (-) 1350 WP_014582035.1 glutamate--cysteine ligase -
  NMBM01240355_RS06555 (NMBM01240355_1191) leuC 1242136..1243545 (+) 1410 WP_002224507.1 3-isopropylmalate dehydratase large subunit -
  NMBM01240355_RS06560 (NMBM01240355_1192) - 1243642..1243896 (+) 255 WP_002213442.1 hypothetical protein -
  NMBM01240355_RS06565 (NMBM01240355_1193) leuD 1243958..1244599 (+) 642 WP_002224506.1 3-isopropylmalate dehydratase small subunit -
  NMBM01240355_RS06570 (NMBM01240355_1194) - 1244664..1245125 (+) 462 WP_002237965.1 YhcH/YjgK/YiaL family protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24939.75 Da        Isoelectric Point: 5.3782

>NTDB_id=39048 NMBM01240355_RS06545 WP_002213447.1 1239727..1240404(-) (ysxA/radC) [Neisseria meningitidis M01-240355]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTSQSVCSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=39048 NMBM01240355_RS06545 WP_002213447.1 1239727..1240404(-) (ysxA/radC) [Neisseria meningitidis M01-240355]
ATGAGCATCAAGCAATGGCCGGAGGGGGAAAGGCCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCGTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTTGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACGGTGGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATTGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTTACCTCGCAAA
GCGTCTGTTCGTTCAGACAGCTCGGGTTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JZI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378

Multiple sequence alignment