Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   FSA28_RS01315 Genome accession   NZ_CP044495
Coordinates   271243..272301 (+) Length   352 a.a.
NCBI ID   WP_002290681.1    Uniprot ID   -
Organism   Streptococcus mutans strain UA140     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 266243..277301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA28_RS01300 (FSA28_0049) - 267522..269171 (+) 1650 WP_002290679.1 peptide ABC transporter substrate-binding protein -
  FSA28_RS01305 (FSA28_0050) - 269277..270191 (+) 915 WP_002262739.1 ABC transporter permease -
  FSA28_RS01310 (FSA28_0051) - 270202..271233 (+) 1032 WP_002263989.1 ABC transporter permease -
  FSA28_RS01315 (FSA28_0052) oppD 271243..272301 (+) 1059 WP_002290681.1 ABC transporter ATP-binding protein Regulator
  FSA28_RS01320 (FSA28_0053) amiF 272294..273220 (+) 927 WP_002267002.1 ATP-binding cassette domain-containing protein Regulator
  FSA28_RS01325 (FSA28_0054) - 273882..274484 (+) 603 WP_002290683.1 nitroreductase family protein -
  FSA28_RS01330 (FSA28_0055) - 274701..275666 (-) 966 WP_002286648.1 LuxR C-terminal-related transcriptional regulator -
  FSA28_RS01335 (FSA28_0056) ptcA 275905..276924 (+) 1020 WP_002290685.1 putrescine carbamoyltransferase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39461.96 Da        Isoelectric Point: 5.4113

>NTDB_id=390416 FSA28_RS01315 WP_002290681.1 271243..272301(+) (oppD) [Streptococcus mutans strain UA140]
MSKEKILQVNNLHVNFHTYAGEVKAIRDVSFYLEKGETLAIVGESGSGKSVTTRTLMGLSAKNAEIFGDIEFKGRNLNDL
KEEDWVHIRGNDISMIFQDPMTSLDPTMRIGLQIAEPIIKHEKVTKKEALKRALDMMEKVGIPNAQEQEHINDYPHQWSG
GMRQRAVIAIALATNPEILIADEPTTALDVTIQAQILHLMKEIQKNTDSSIIFITHDLGVVAGMADRVAVMYAGKIVEYG
TVDEVFYNPQHPYTWGLLNSMPTTNTASGSLHSIPGTPPDLLQPPQGDAFAPRNEFALDIDLKEEPPFFKVSDSHYAATW
LLDDRAPKITPPERILQRWEKWKSLQGEKHND

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=390416 FSA28_RS01315 WP_002290681.1 271243..272301(+) (oppD) [Streptococcus mutans strain UA140]
ATGAGTAAGGAAAAAATTTTACAAGTCAATAACCTCCATGTCAATTTTCATACCTATGCAGGTGAAGTAAAAGCTATTCG
CGATGTTAGTTTTTATTTAGAAAAAGGGGAAACGCTGGCTATTGTTGGCGAATCTGGTTCTGGAAAGTCGGTGACCACAC
GAACTTTAATGGGGTTGTCAGCAAAGAATGCTGAGATTTTCGGAGATATTGAGTTTAAGGGACGCAATCTAAATGATTTG
AAGGAAGAAGACTGGGTTCATATTCGCGGAAATGATATTTCCATGATTTTCCAAGATCCTATGACAAGTTTGGATCCAAC
CATGCGTATTGGCCTTCAAATTGCTGAACCTATTATCAAGCATGAAAAAGTAACTAAAAAAGAAGCTCTCAAGCGGGCTC
TTGACATGATGGAAAAGGTCGGTATTCCCAATGCGCAAGAGCAAGAACACATCAACGATTATCCTCATCAGTGGTCAGGC
GGTATGCGCCAGCGCGCTGTCATAGCTATTGCTTTGGCAACTAATCCTGAAATCCTTATTGCAGATGAACCAACGACGGC
TCTTGATGTTACCATTCAAGCACAAATTCTTCATTTAATGAAAGAAATCCAAAAGAATACTGACTCTTCCATTATCTTTA
TCACTCATGATTTGGGTGTCGTTGCAGGTATGGCAGACCGTGTTGCTGTTATGTATGCAGGCAAGATTGTGGAATATGGT
ACAGTAGATGAGGTTTTCTACAACCCACAGCATCCCTACACTTGGGGGCTTCTCAATTCGATGCCTACAACTAATACAGC
TTCAGGCAGTTTGCATTCAATTCCCGGAACACCGCCTGACTTGTTGCAGCCCCCTCAAGGAGATGCTTTTGCTCCAAGAA
ATGAATTCGCTCTTGATATTGATCTTAAGGAGGAGCCGCCATTTTTTAAAGTTAGTGATTCACATTATGCTGCTACTTGG
CTGTTAGATGATCGTGCTCCTAAGATTACTCCGCCGGAAAGAATTTTGCAGCGTTGGGAAAAATGGAAGAGCTTACAGGG
AGAAAAGCATAATGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-185)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(237-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

98.864

100

0.989
  amiE Streptococcus salivarius strain HSISS4

54.701

99.716

0.545
  amiE Streptococcus thermophilus LMG 18311

54.416

99.716

0.543
  amiE Streptococcus thermophilus LMD-9

54.416

99.716

0.543

Multiple sequence alignment