Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   FSA28_RS01320 Genome accession   NZ_CP044495
Coordinates   272294..273220 (+) Length   308 a.a.
NCBI ID   WP_002267002.1    Uniprot ID   A0AAX1K1D7
Organism   Streptococcus mutans strain UA140     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 267294..278220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA28_RS01300 (FSA28_0049) - 267522..269171 (+) 1650 WP_002290679.1 peptide ABC transporter substrate-binding protein -
  FSA28_RS01305 (FSA28_0050) - 269277..270191 (+) 915 WP_002262739.1 ABC transporter permease -
  FSA28_RS01310 (FSA28_0051) - 270202..271233 (+) 1032 WP_002263989.1 ABC transporter permease -
  FSA28_RS01315 (FSA28_0052) oppD 271243..272301 (+) 1059 WP_002290681.1 ABC transporter ATP-binding protein Regulator
  FSA28_RS01320 (FSA28_0053) amiF 272294..273220 (+) 927 WP_002267002.1 ATP-binding cassette domain-containing protein Regulator
  FSA28_RS01325 (FSA28_0054) - 273882..274484 (+) 603 WP_002290683.1 nitroreductase family protein -
  FSA28_RS01330 (FSA28_0055) - 274701..275666 (-) 966 WP_002286648.1 LuxR C-terminal-related transcriptional regulator -
  FSA28_RS01335 (FSA28_0056) ptcA 275905..276924 (+) 1020 WP_002290685.1 putrescine carbamoyltransferase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34842.97 Da        Isoelectric Point: 7.3331

>NTDB_id=390417 FSA28_RS01320 WP_002267002.1 272294..273220(+) (amiF) [Streptococcus mutans strain UA140]
MTENRKKLVEVKNVSLTFNKGKANQVKAIDNVSFDIYEGEVFGLVGESGSGKTTIGRAILKLYNIDKGEIDFEGETISKL
KGKSLFNFRKKAQMIFQDPQASLNSRMKVRDIIAEGLDVHKLVKNKADRDAKVQDLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKIVEIGTSDE
VYHHPIHPYTQSLLSAVPEPDPVLERQRIHKVYDPVDELDGQEREMREITPGHFVLATEEEAKAYKKK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=390417 FSA28_RS01320 WP_002267002.1 272294..273220(+) (amiF) [Streptococcus mutans strain UA140]
ATGACTGAAAATCGTAAAAAACTAGTTGAAGTCAAAAATGTTTCTTTGACATTCAATAAAGGAAAAGCCAACCAAGTAAA
AGCAATAGATAATGTCAGCTTTGATATCTATGAAGGAGAAGTTTTTGGACTTGTTGGGGAATCTGGCTCAGGTAAGACGA
CAATTGGCCGTGCTATTTTAAAACTTTACAATATTGATAAAGGAGAAATTGATTTCGAAGGTGAAACGATTTCAAAATTA
AAGGGAAAATCATTGTTTAATTTTCGTAAGAAAGCGCAAATGATTTTCCAAGATCCTCAAGCCAGCTTGAATAGTCGCAT
GAAAGTTAGGGATATTATTGCTGAAGGACTTGATGTTCATAAATTGGTTAAAAATAAGGCAGACCGTGACGCAAAAGTTC
AGGATTTACTGGATCTGGTTGGGTTAAATAAGGATCATTTAACACGTTATCCGCATGAATTTTCAGGCGGTCAGCGTCAA
CGGATTGGGATTGCTCGTGCTTTGGCGGTTGAGCCTAAATTCATTATTGCTGATGAGCCCATCTCTGCTTTGGATGTCTC
TATCCAAGCTCAGGTTGTTAATCTCATGCAAAAACTGCAGCATGAACAGGGACTAACGTACCTGTTCATTGCTCATGATT
TATCAATGGTTAAGTATATTTCGGATCGCATTGGTGTGATGCATTGGGGAAAAATTGTGGAAATTGGGACATCTGATGAG
GTTTACCATCACCCCATTCATCCTTATACTCAAAGTCTCTTATCAGCTGTTCCTGAACCCGATCCAGTTTTAGAACGTCA
ACGTATTCATAAAGTTTATGACCCAGTTGATGAGTTAGATGGGCAGGAACGGGAAATGAGAGAAATTACACCGGGGCATT
TTGTTTTAGCAACAGAAGAAGAGGCAAAAGCCTATAAGAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

56.066

99.026

0.555
  amiF Streptococcus thermophilus LMG 18311

55.738

99.026

0.552
  amiF Streptococcus salivarius strain HSISS4

55.738

99.026

0.552

Multiple sequence alignment