Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrM   Type   Regulator
Locus tag   FSA40_RS08675 Genome accession   NZ_CP044493
Coordinates   1716761..1717447 (+) Length   228 a.a.
NCBI ID   WP_151416427.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   repress competence development; negative regulate HdrR activity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1711761..1722447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS08655 - 1713770..1713991 (+) 222 WP_018110215.1 hypothetical protein -
  FSA40_RS08660 (FSA40_1736) - 1714381..1715325 (+) 945 WP_002262667.1 magnesium transporter CorA family protein -
  FSA40_RS08665 (FSA40_1737) - 1715607..1716269 (+) 663 WP_151416426.1 DUF1129 domain-containing protein -
  FSA40_RS08670 (FSA40_1738) hdrR 1716408..1716764 (+) 357 WP_002268419.1 LytTR family transcriptional regulator HdrR Regulator
  FSA40_RS08675 (FSA40_1739) hdrM 1716761..1717447 (+) 687 WP_151416427.1 hdrR negative regulator HdrM Regulator
  FSA40_RS08680 (FSA40_1740) - 1717455..1718174 (-) 720 WP_002265689.1 TraX family protein -
  FSA40_RS08685 (FSA40_1741) rpsR 1718493..1718732 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  FSA40_RS08690 (FSA40_1742) ssbA 1718762..1719256 (-) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  FSA40_RS08695 (FSA40_1743) rpsF 1719274..1719564 (-) 291 WP_002261866.1 30S ribosomal protein S6 -
  FSA40_RS08700 (FSA40_1744) - 1719720..1719965 (-) 246 WP_002263367.1 hypothetical protein -
  FSA40_RS08705 (FSA40_1745) - 1720270..1720440 (+) 171 WP_002269894.1 hypothetical protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26086.20 Da        Isoelectric Point: 7.5075

>NTDB_id=390386 FSA40_RS08675 WP_151416427.1 1716761..1717447(+) (hdrM) [Streptococcus mutans strain MD]
MKKNYFWYGLLGLLALYLITIAFIPGFHIFFSNMLMLALFFMLIALSNRSIFFFFLALGFLSIYLKDIFHFDYSTGPLFT
GIIIIGVILNSFLKPHYSYSYKGNHYFNMKQNANYIDNETDVFLKTLFSENTSYVTSQELNKIIIDTKFGKQSVDLSQAQ
FMTDSPEIHIDVSFGETNLRIPNNWKIINKTHSPFASISFSGFPSTNGDFINVTLTGTVAMGSLNIQY

Nucleotide


Download         Length: 687 bp        

>NTDB_id=390386 FSA40_RS08675 WP_151416427.1 1716761..1717447(+) (hdrM) [Streptococcus mutans strain MD]
ATGAAAAAAAATTATTTTTGGTACGGTCTGCTTGGGCTTCTCGCACTTTACCTTATTACTATTGCTTTTATCCCGGGATT
TCATATTTTCTTTAGCAACATGTTGATGTTGGCCCTGTTCTTTATGTTAATAGCTTTGAGTAACAGGAGTATCTTCTTTT
TCTTTCTAGCCTTAGGTTTTCTTAGTATCTACTTGAAAGATATCTTTCATTTTGACTATTCTACCGGACCGCTTTTTACG
GGTATAATCATTATCGGCGTTATTTTAAATAGTTTCCTCAAACCACACTATTCTTATTCTTATAAAGGAAATCATTATTT
TAATATGAAACAAAATGCTAACTACATTGATAACGAAACAGATGTCTTTTTAAAAACACTTTTTTCTGAAAATACCAGTT
ATGTGACTTCTCAAGAATTAAATAAAATTATTATTGATACTAAGTTTGGAAAACAATCTGTTGATCTCTCTCAAGCTCAA
TTTATGACAGATTCTCCCGAAATTCATATAGATGTTAGCTTTGGTGAAACCAATCTGCGTATTCCAAACAACTGGAAAAT
CATCAATAAAACTCACTCCCCCTTTGCTTCCATTTCATTTTCAGGTTTTCCTAGCACAAATGGTGATTTTATTAACGTTA
CATTGACTGGAACAGTGGCTATGGGATCTCTAAACATTCAATATTAA

Domains

Predicted by InterproScan.

Cell wall-active antibiotics response 4TMS YvqF (LiaF-like_C)

(128-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrM Streptococcus mutans UA159

99.123

100

0.991

Multiple sequence alignment