Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrR   Type   Regulator
Locus tag   FSA40_RS08670 Genome accession   NZ_CP044493
Coordinates   1716408..1716764 (+) Length   118 a.a.
NCBI ID   WP_002268419.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   activate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1711408..1721764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS08655 - 1713770..1713991 (+) 222 WP_018110215.1 hypothetical protein -
  FSA40_RS08660 (FSA40_1736) - 1714381..1715325 (+) 945 WP_002262667.1 magnesium transporter CorA family protein -
  FSA40_RS08665 (FSA40_1737) - 1715607..1716269 (+) 663 WP_151416426.1 DUF1129 domain-containing protein -
  FSA40_RS08670 (FSA40_1738) hdrR 1716408..1716764 (+) 357 WP_002268419.1 LytTR family transcriptional regulator HdrR Regulator
  FSA40_RS08675 (FSA40_1739) hdrM 1716761..1717447 (+) 687 WP_151416427.1 hdrR negative regulator HdrM Regulator
  FSA40_RS08680 (FSA40_1740) - 1717455..1718174 (-) 720 WP_002265689.1 TraX family protein -
  FSA40_RS08685 (FSA40_1741) rpsR 1718493..1718732 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  FSA40_RS08690 (FSA40_1742) ssbA 1718762..1719256 (-) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  FSA40_RS08695 (FSA40_1743) rpsF 1719274..1719564 (-) 291 WP_002261866.1 30S ribosomal protein S6 -
  FSA40_RS08700 (FSA40_1744) - 1719720..1719965 (-) 246 WP_002263367.1 hypothetical protein -
  FSA40_RS08705 (FSA40_1745) - 1720270..1720440 (+) 171 WP_002269894.1 hypothetical protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 14107.43 Da        Isoelectric Point: 10.3603

>NTDB_id=390385 FSA40_RS08670 WP_002268419.1 1716408..1716764(+) (hdrR) [Streptococcus mutans strain MD]
MEIHLNPKHQSVEVFLEKEIFFLNIRDILFIEISNRKTYVHTNDKVYKSHLLLRDFKEILPDYFQQIGKSQIANSLEISA
INKSFSSTPKISFRHSSKTTWVSRKYYKELLMKKRSLL

Nucleotide


Download         Length: 357 bp        

>NTDB_id=390385 FSA40_RS08670 WP_002268419.1 1716408..1716764(+) (hdrR) [Streptococcus mutans strain MD]
ATGGAGATTCACTTAAATCCTAAACATCAGTCAGTAGAGGTCTTTTTAGAAAAGGAAATTTTCTTTTTAAATATTAGAGA
TATTCTCTTTATTGAAATCAGCAATCGGAAAACTTATGTTCATACTAATGATAAAGTTTACAAAAGCCATTTGCTTCTGC
GCGATTTCAAAGAAATTTTACCTGATTATTTTCAGCAAATTGGCAAGAGTCAGATTGCCAATAGCCTTGAAATTTCTGCC
ATCAATAAGTCTTTCTCCTCTACCCCCAAAATTAGTTTTAGACATTCATCCAAAACAACTTGGGTATCTCGTAAATACTA
CAAAGAATTACTTATGAAAAAAAGGAGTTTACTATGA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(19-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrR Streptococcus mutans UA159

99.153

100

0.992

Multiple sequence alignment