Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   FSA40_RS01265 Genome accession   NZ_CP044493
Coordinates   232360..233412 (+) Length   350 a.a.
NCBI ID   WP_002268461.1    Uniprot ID   A0AAX1K1R1
Organism   Streptococcus mutans strain MD     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 227360..238412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS01250 (FSA40_0250) - 228639..230288 (+) 1650 WP_002262740.1 peptide ABC transporter substrate-binding protein -
  FSA40_RS01255 (FSA40_0251) - 230394..231308 (+) 915 WP_151416171.1 ABC transporter permease -
  FSA40_RS01260 (FSA40_0252) - 231319..232350 (+) 1032 WP_002263989.1 ABC transporter permease -
  FSA40_RS01265 (FSA40_0253) oppD 232360..233412 (+) 1053 WP_002268461.1 ABC transporter ATP-binding protein Regulator
  FSA40_RS01270 (FSA40_0254) amiF 233405..234331 (+) 927 WP_002280001.1 ATP-binding cassette domain-containing protein Regulator
  FSA40_RS01275 (FSA40_0255) - 234975..235577 (+) 603 WP_151416172.1 nitroreductase family protein -
  FSA40_RS01280 (FSA40_0256) - 235794..236759 (-) 966 WP_002263993.1 LuxR C-terminal-related transcriptional regulator -
  FSA40_RS01285 (FSA40_0257) ptcA 236998..238017 (+) 1020 WP_002282737.1 putrescine carbamoyltransferase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39204.71 Da        Isoelectric Point: 5.5768

>NTDB_id=390345 FSA40_RS01265 WP_002268461.1 232360..233412(+) (oppD) [Streptococcus mutans strain MD]
MSKEKILQVNNLHVNFHTYAGEVKAIRDVSFYLEKGETLAIVGESGSGKSVTTRTLMGLSAKNAEIFGDIEFKGRNLNDL
KEEDWVHIRGNDISMIFQDPMTSLDPTMRIGLQIAEPIIKHEKVTKKEALKRALDMMEKVGIPNAQEHINDYPHQWSGGM
RQRAVIAIALATNPEILIADEPTTALDVTIQAQILHLMKEIQKNTDSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTNTASGSLHSIPGTPPDLLQPPQGDAFAPRNEFALDIDLKEEPPFFKVSDSHYAATWLL
DDRAPKITPPERILQRWEKWKSLQGEKHND

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=390345 FSA40_RS01265 WP_002268461.1 232360..233412(+) (oppD) [Streptococcus mutans strain MD]
ATGAGTAAGGAAAAAATTTTACAAGTCAATAACCTCCATGTCAATTTTCATACCTATGCAGGTGAAGTAAAAGCTATTCG
CGATGTTAGTTTTTATTTAGAAAAAGGGGAAACACTGGCTATTGTTGGCGAATCTGGTTCTGGAAAGTCGGTAACCACAC
GAACTTTAATGGGGTTGTCAGCAAAGAATGCTGAGATTTTCGGAGATATTGAGTTTAAGGGACGCAATCTAAATGATTTG
AAGGAAGAAGACTGGGTTCATATTCGCGGAAATGATATTTCCATGATTTTCCAAGATCCTATGACAAGTTTGGATCCAAC
CATGCGTATTGGCCTTCAAATTGCTGAACCTATTATCAAGCATGAAAAAGTAACTAAAAAAGAAGCTCTCAAGCGGGCTC
TTGACATGATGGAAAAGGTTGGTATTCCCAATGCGCAAGAACACATCAACGATTATCCTCATCAGTGGTCAGGCGGTATG
CGCCAGCGCGCTGTCATAGCTATTGCTTTGGCAACTAATCCTGAAATCCTTATTGCAGATGAACCAACGACGGCTCTTGA
TGTTACCATTCAAGCACAAATTCTTCATTTAATGAAAGAAATCCAAAAGAATACTGACTCTTCCATTATCTTTATCACTC
ATGATTTGGGTGTCGTTGCAGGTATGGCAGACCGTGTTGCTGTTATGTATGCAGGCAAGATTGTGGAATATGGTACAGTA
GATGAGGTTTTCTACAACCCACAGCATCCCTACACTTGGGGGCTTCTCAATTCGATGCCTACAACTAATACAGCTTCAGG
CAGTTTGCATTCAATTCCCGGAACACCGCCTGACTTGTTGCAGCCCCCTCAAGGAGATGCTTTTGCTCCAAGAAATGAAT
TCGCTCTTGATATTGATCTTAAGGAGGAGCCGCCATTTTTTAAAGTTAGTGATTCACATTATGCTGCTACTTGGCTGTTA
GATGATCGTGCTCCTAAGATTACTCCGCCGGAAAGAATTTTGCAGCGTTGGGAAAAATGGAAGAGCTTACAGGGAGAAAA
GCATAATGACTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

99.429

100

0.994
  amiE Streptococcus salivarius strain HSISS4

55.014

99.714

0.549
  amiE Streptococcus thermophilus LMG 18311

54.728

99.714

0.546
  amiE Streptococcus thermophilus LMD-9

54.728

99.714

0.546

Multiple sequence alignment