Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   FSA40_RS01270 Genome accession   NZ_CP044493
Coordinates   233405..234331 (+) Length   308 a.a.
NCBI ID   WP_002280001.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 228405..239331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS01250 (FSA40_0250) - 228639..230288 (+) 1650 WP_002262740.1 peptide ABC transporter substrate-binding protein -
  FSA40_RS01255 (FSA40_0251) - 230394..231308 (+) 915 WP_151416171.1 ABC transporter permease -
  FSA40_RS01260 (FSA40_0252) - 231319..232350 (+) 1032 WP_002263989.1 ABC transporter permease -
  FSA40_RS01265 (FSA40_0253) oppD 232360..233412 (+) 1053 WP_002268461.1 ABC transporter ATP-binding protein Regulator
  FSA40_RS01270 (FSA40_0254) amiF 233405..234331 (+) 927 WP_002280001.1 ATP-binding cassette domain-containing protein Regulator
  FSA40_RS01275 (FSA40_0255) - 234975..235577 (+) 603 WP_151416172.1 nitroreductase family protein -
  FSA40_RS01280 (FSA40_0256) - 235794..236759 (-) 966 WP_002263993.1 LuxR C-terminal-related transcriptional regulator -
  FSA40_RS01285 (FSA40_0257) ptcA 236998..238017 (+) 1020 WP_002282737.1 putrescine carbamoyltransferase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34858.97 Da        Isoelectric Point: 7.3331

>NTDB_id=390346 FSA40_RS01270 WP_002280001.1 233405..234331(+) (amiF) [Streptococcus mutans strain MD]
MTENRKKLVEVKNVSLTFNKGKANQVKAIDNVSFDIYEGEVFGLVGESGSGKTTIGRAILKLYNIDKGEIDFEGETISKL
KGKSLFNFRKKAQMIFQDPQASLNSRMKVRDIIAEGLDVHKLVKNKADRDAKVQDLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKIVEIGTSDE
VYHHPIHPYTQSLLSAVPEPDPVLERQRIHKVYDPVDELDGQEREMREITPGHFVLSTEEEAKAYKKK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=390346 FSA40_RS01270 WP_002280001.1 233405..234331(+) (amiF) [Streptococcus mutans strain MD]
ATGACTGAAAATCGTAAAAAACTAGTTGAAGTCAAAAATGTTTCTTTGACATTCAATAAAGGAAAAGCCAACCAAGTAAA
AGCAATAGATAATGTCAGCTTTGATATCTATGAAGGAGAAGTTTTTGGACTTGTTGGGGAATCTGGCTCAGGTAAGACGA
CAATTGGCCGTGCTATTTTAAAACTTTACAATATTGATAAAGGAGAAATTGATTTCGAAGGTGAAACGATTTCAAAATTA
AAGGGAAAATCATTGTTTAATTTTCGTAAGAAAGCGCAAATGATTTTCCAAGATCCTCAAGCCAGCTTGAATAGTCGCAT
GAAAGTTAGGGATATTATTGCTGAAGGACTTGATGTTCATAAATTGGTTAAAAATAAGGCAGACCGTGACGCAAAAGTTC
AGGATTTACTGGATCTGGTTGGGTTAAATAAGGATCATTTAACACGTTATCCGCATGAATTTTCAGGCGGTCAGCGTCAA
CGGATTGGGATTGCTCGTGCTTTGGCGGTTGAGCCTAAATTCATTATTGCTGATGAGCCCATCTCTGCTTTGGATGTCTC
TATCCAAGCTCAGGTTGTTAATCTCATGCAAAAACTGCAGCATGAACAGGGACTAACGTACCTGTTCATTGCTCATGATT
TATCAATGGTTAAGTATATTTCGGATCGCATTGGTGTGATGCATTGGGGAAAAATTGTGGAAATTGGGACATCTGATGAG
GTTTACCATCACCCCATTCATCCTTATACTCAAAGTCTCTTATCAGCTGTTCCTGAACCCGATCCAGTTTTAGAACGTCA
ACGTATTCATAAAGTTTATGACCCAGTTGATGAGTTAGATGGGCAGGAACGAGAAATGAGAGAAATTACACCGGGGCATT
TTGTTTTATCAACAGAAGAAGAGGCAAAAGCCTATAAGAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

56.066

99.026

0.555
  amiF Streptococcus thermophilus LMG 18311

55.738

99.026

0.552
  amiF Streptococcus salivarius strain HSISS4

55.738

99.026

0.552

Multiple sequence alignment