Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrM   Type   Regulator
Locus tag   FSA31_RS08440 Genome accession   NZ_CP044492
Coordinates   1691049..1691735 (+) Length   228 a.a.
NCBI ID   WP_002268420.1    Uniprot ID   -
Organism   Streptococcus mutans strain T8     
Function   repress competence development; negative regulate HdrR activity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1686049..1696735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA31_RS08420 - 1688193..1688414 (+) 222 WP_032525493.1 hypothetical protein -
  FSA31_RS08425 (FSA31_1668) - 1688814..1689758 (+) 945 WP_002284766.1 magnesium transporter CorA family protein -
  FSA31_RS08430 (FSA31_1669) - 1689895..1690557 (+) 663 WP_002265267.1 DUF1129 domain-containing protein -
  FSA31_RS08435 (FSA31_1670) hdrR 1690696..1691052 (+) 357 WP_002268419.1 LytTR family transcriptional regulator HdrR Regulator
  FSA31_RS08440 (FSA31_1671) hdrM 1691049..1691735 (+) 687 WP_002268420.1 hdrR negative regulator HdrM Regulator
  FSA31_RS08445 (FSA31_1672) - 1691743..1692462 (-) 720 WP_002273460.1 TraX family protein -
  FSA31_RS08450 (FSA31_1673) rpsR 1692781..1693020 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  FSA31_RS08455 (FSA31_1674) ssbA 1693050..1693544 (-) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  FSA31_RS08460 (FSA31_1675) rpsF 1693562..1693852 (-) 291 WP_002261866.1 30S ribosomal protein S6 -
  FSA31_RS08465 (FSA31_1676) - 1694008..1694253 (-) 246 WP_002263367.1 hypothetical protein -
  FSA31_RS08470 (FSA31_1677) - 1694558..1694728 (+) 171 WP_002284761.1 hypothetical protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26101.17 Da        Isoelectric Point: 6.7581

>NTDB_id=390314 FSA31_RS08440 WP_002268420.1 1691049..1691735(+) (hdrM) [Streptococcus mutans strain T8]
MKKNYFWYGLLGLLALYLITIAFIPGFHIFFSNMLMLALFFMLIALSNRSIFFFFLALGFLSIYLKDIFHFDYSTGPLFT
GIIIIGVILNSFLKPHYSYSYKGNHYFNMKQNANYIDNETDVFLKTLFSENTSYVTSQELNKIIIDTKFGEQSVDLSQAQ
FMTDSPEIHIDISFGETNLRIPNNWKIINKTHSPFASISFSGFPSTNGDFINVTLTGTVAMGSLNIQY

Nucleotide


Download         Length: 687 bp        

>NTDB_id=390314 FSA31_RS08440 WP_002268420.1 1691049..1691735(+) (hdrM) [Streptococcus mutans strain T8]
ATGAAAAAAAATTATTTTTGGTACGGTCTGCTTGGGCTTCTCGCACTTTACCTTATTACTATTGCTTTTATCCCGGGATT
TCATATTTTCTTTAGCAACATGTTGATGTTGGCTCTGTTCTTTATGTTAATAGCTTTGAGTAACAGGAGTATCTTCTTTT
TCTTTCTAGCCTTAGGTTTTCTTAGTATCTACTTGAAAGATATCTTTCATTTTGACTATTCTACCGGACCGCTTTTTACG
GGTATAATCATTATCGGCGTTATTTTAAATAGTTTCCTCAAACCACACTATTCTTATTCTTATAAAGGAAATCATTATTT
TAATATGAAACAAAATGCTAACTACATTGATAACGAAACAGATGTCTTTTTAAAAACACTTTTTTCTGAAAATACCAGTT
ATGTGACTTCTCAAGAATTAAATAAAATTATTATTGATACTAAGTTTGGAGAACAATCTGTTGATCTCTCTCAAGCTCAA
TTTATGACAGATTCTCCCGAAATTCATATAGATATTAGCTTTGGTGAAACCAATCTGCGTATTCCAAACAACTGGAAAAT
CATCAATAAAACTCACTCCCCCTTTGCTTCCATTTCATTTTCAGGTTTTCCTAGCACAAATGGTGATTTTATTAACGTTA
CATTGACTGGAACAGTGGCTATGGGATCTCTAAACATTCAATATTAA

Domains

Predicted by InterproScan.

Cell wall-active antibiotics response 4TMS YvqF (LiaF-like_C)

(128-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrM Streptococcus mutans UA159

99.123

100

0.991

Multiple sequence alignment