Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrR   Type   Regulator
Locus tag   FSA31_RS08435 Genome accession   NZ_CP044492
Coordinates   1690696..1691052 (+) Length   118 a.a.
NCBI ID   WP_002268419.1    Uniprot ID   -
Organism   Streptococcus mutans strain T8     
Function   activate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1685696..1696052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA31_RS08420 - 1688193..1688414 (+) 222 WP_032525493.1 hypothetical protein -
  FSA31_RS08425 (FSA31_1668) - 1688814..1689758 (+) 945 WP_002284766.1 magnesium transporter CorA family protein -
  FSA31_RS08430 (FSA31_1669) - 1689895..1690557 (+) 663 WP_002265267.1 DUF1129 domain-containing protein -
  FSA31_RS08435 (FSA31_1670) hdrR 1690696..1691052 (+) 357 WP_002268419.1 LytTR family transcriptional regulator HdrR Regulator
  FSA31_RS08440 (FSA31_1671) hdrM 1691049..1691735 (+) 687 WP_002268420.1 hdrR negative regulator HdrM Regulator
  FSA31_RS08445 (FSA31_1672) - 1691743..1692462 (-) 720 WP_002273460.1 TraX family protein -
  FSA31_RS08450 (FSA31_1673) rpsR 1692781..1693020 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  FSA31_RS08455 (FSA31_1674) ssbA 1693050..1693544 (-) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  FSA31_RS08460 (FSA31_1675) rpsF 1693562..1693852 (-) 291 WP_002261866.1 30S ribosomal protein S6 -
  FSA31_RS08465 (FSA31_1676) - 1694008..1694253 (-) 246 WP_002263367.1 hypothetical protein -
  FSA31_RS08470 (FSA31_1677) - 1694558..1694728 (+) 171 WP_002284761.1 hypothetical protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 14107.43 Da        Isoelectric Point: 10.3603

>NTDB_id=390313 FSA31_RS08435 WP_002268419.1 1690696..1691052(+) (hdrR) [Streptococcus mutans strain T8]
MEIHLNPKHQSVEVFLEKEIFFLNIRDILFIEISNRKTYVHTNDKVYKSHLLLRDFKEILPDYFQQIGKSQIANSLEISA
INKSFSSTPKISFRHSSKTTWVSRKYYKELLMKKRSLL

Nucleotide


Download         Length: 357 bp        

>NTDB_id=390313 FSA31_RS08435 WP_002268419.1 1690696..1691052(+) (hdrR) [Streptococcus mutans strain T8]
ATGGAGATTCACTTAAATCCTAAACATCAGTCAGTAGAGGTCTTTTTAGAAAAGGAAATTTTCTTTTTAAATATTAGAGA
TATTCTCTTTATTGAAATCAGCAATCGGAAAACTTATGTTCATACTAATGATAAAGTTTACAAAAGCCATTTGCTTCTGC
GCGATTTCAAAGAAATTTTACCTGATTATTTTCAGCAAATTGGCAAGAGTCAGATTGCCAATAGCCTTGAAATTTCTGCC
ATCAATAAGTCTTTCTCCTCTACCCCCAAAATTAGTTTTAGACATTCATCCAAAACAACTTGGGTATCTCGTAAATACTA
CAAAGAATTACTTATGAAAAAAAGGAGTTTACTATGA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(19-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrR Streptococcus mutans UA159

99.153

100

0.992

Multiple sequence alignment