Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   FSA31_RS01290 Genome accession   NZ_CP044492
Coordinates   272802..273854 (+) Length   350 a.a.
NCBI ID   WP_002268461.1    Uniprot ID   A0AAX1K1R1
Organism   Streptococcus mutans strain T8     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 267802..278854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA31_RS01275 (FSA31_0258) - 269081..270730 (+) 1650 WP_002284702.1 peptide ABC transporter substrate-binding protein -
  FSA31_RS01280 (FSA31_0259) - 270836..271750 (+) 915 WP_002262739.1 ABC transporter permease -
  FSA31_RS01285 (FSA31_0260) - 271761..272792 (+) 1032 WP_002263989.1 ABC transporter permease -
  FSA31_RS01290 (FSA31_0261) oppD 272802..273854 (+) 1053 WP_002268461.1 ABC transporter ATP-binding protein Regulator
  FSA31_RS01295 (FSA31_0262) amiF 273847..274773 (+) 927 WP_002284701.1 ATP-binding cassette domain-containing protein Regulator
  FSA31_RS01300 (FSA31_0263) - 275429..276031 (+) 603 WP_002262735.1 nitroreductase family protein -
  FSA31_RS01305 (FSA31_0264) gshAB 276108..278429 (-) 2322 WP_002284700.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39204.71 Da        Isoelectric Point: 5.5768

>NTDB_id=390274 FSA31_RS01290 WP_002268461.1 272802..273854(+) (oppD) [Streptococcus mutans strain T8]
MSKEKILQVNNLHVNFHTYAGEVKAIRDVSFYLEKGETLAIVGESGSGKSVTTRTLMGLSAKNAEIFGDIEFKGRNLNDL
KEEDWVHIRGNDISMIFQDPMTSLDPTMRIGLQIAEPIIKHEKVTKKEALKRALDMMEKVGIPNAQEHINDYPHQWSGGM
RQRAVIAIALATNPEILIADEPTTALDVTIQAQILHLMKEIQKNTDSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTNTASGSLHSIPGTPPDLLQPPQGDAFAPRNEFALDIDLKEEPPFFKVSDSHYAATWLL
DDRAPKITPPERILQRWEKWKSLQGEKHND

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=390274 FSA31_RS01290 WP_002268461.1 272802..273854(+) (oppD) [Streptococcus mutans strain T8]
ATGAGTAAGGAAAAAATTTTACAAGTCAATAACCTCCATGTCAATTTTCATACCTATGCAGGTGAAGTAAAAGCTATTCG
CGATGTTAGTTTTTATTTAGAAAAAGGGGAAACGCTGGCTATTGTTGGCGAATCTGGTTCTGGAAAGTCGGTAACCACAC
GAACTTTAATGGGGTTGTCAGCAAAGAATGCTGAGATTTTCGGAGATATTGAGTTTAAGGGACGCAATCTAAATGATTTG
AAGGAAGAAGACTGGGTTCATATTCGCGGAAATGATATTTCCATGATTTTCCAAGATCCTATGACAAGTTTGGATCCAAC
CATGCGTATTGGCCTTCAAATTGCTGAACCTATTATCAAGCATGAAAAAGTAACTAAAAAAGAAGCTCTCAAGCGGGCTC
TTGACATGATGGAAAAGGTTGGTATTCCCAATGCGCAAGAACACATCAACGATTATCCTCATCAGTGGTCAGGCGGTATG
CGCCAGCGCGCTGTCATAGCTATTGCTTTGGCAACTAATCCTGAAATCCTTATTGCAGATGAACCAACGACGGCTCTTGA
TGTTACCATCCAAGCACAAATTCTTCATTTAATGAAAGAAATCCAAAAGAATACTGACTCTTCCATTATCTTTATCACTC
ATGATTTGGGTGTCGTTGCAGGTATGGCAGACCGTGTTGCTGTTATGTATGCAGGCAAGATTGTGGAATATGGTACAGTA
GATGAGGTTTTCTACAACCCACAGCATCCCTACACTTGGGGGCTTCTCAATTCGATGCCTACAACTAATACAGCTTCAGG
CAGTTTGCATTCAATTCCCGGAACACCGCCTGACTTGTTGCAGCCCCCTCAAGGAGATGCTTTTGCTCCAAGAAATGAAT
TCGCTCTTGATATTGATCTTAAGGAGGAGCCGCCATTTTTTAAAGTTAGTGATTCACATTATGCTGCTACTTGGCTGTTA
GATGATCGTGCTCCTAAGATTACTCCGCCGGAAAGAATTTTGCAGCGTTGGGAAAAATGGAAGAGCTTACAGGGAGAAAA
GCATAATGACTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

99.429

100

0.994
  amiE Streptococcus salivarius strain HSISS4

55.014

99.714

0.549
  amiE Streptococcus thermophilus LMG 18311

54.728

99.714

0.546
  amiE Streptococcus thermophilus LMD-9

54.728

99.714

0.546

Multiple sequence alignment