Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   FSA31_RS01295 Genome accession   NZ_CP044492
Coordinates   273847..274773 (+) Length   308 a.a.
NCBI ID   WP_002284701.1    Uniprot ID   -
Organism   Streptococcus mutans strain T8     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 268847..279773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA31_RS01275 (FSA31_0258) - 269081..270730 (+) 1650 WP_002284702.1 peptide ABC transporter substrate-binding protein -
  FSA31_RS01280 (FSA31_0259) - 270836..271750 (+) 915 WP_002262739.1 ABC transporter permease -
  FSA31_RS01285 (FSA31_0260) - 271761..272792 (+) 1032 WP_002263989.1 ABC transporter permease -
  FSA31_RS01290 (FSA31_0261) oppD 272802..273854 (+) 1053 WP_002268461.1 ABC transporter ATP-binding protein Regulator
  FSA31_RS01295 (FSA31_0262) amiF 273847..274773 (+) 927 WP_002284701.1 ATP-binding cassette domain-containing protein Regulator
  FSA31_RS01300 (FSA31_0263) - 275429..276031 (+) 603 WP_002262735.1 nitroreductase family protein -
  FSA31_RS01305 (FSA31_0264) gshAB 276108..278429 (-) 2322 WP_002284700.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34841.00 Da        Isoelectric Point: 7.3331

>NTDB_id=390275 FSA31_RS01295 WP_002284701.1 273847..274773(+) (amiF) [Streptococcus mutans strain T8]
MTENRKKLVEVKNVSLTFNKGKANQVKAIDNVSFDIYEGEVFGLVGESGSGKTTIGRAILKLYNIDKGEIDFEGETISKL
KGKSLFNFRKKAQMIFQDPQASLNSRMKVRDIIAEGLDVHKLVKNKADRDAKVQDLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKIVEIGTSDE
VYHHPIHPYTQSLLSAVPEPDPVLERQRIHKVYDPVDELDGQEREMREIVPGHFVLATEEEAKAYKKK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=390275 FSA31_RS01295 WP_002284701.1 273847..274773(+) (amiF) [Streptococcus mutans strain T8]
ATGACTGAAAATCGTAAAAAACTAGTTGAAGTCAAAAATGTTTCTTTGACATTCAATAAAGGAAAAGCCAACCAAGTAAA
AGCAATAGATAATGTCAGCTTTGATATCTATGAAGGAGAAGTTTTTGGACTTGTTGGGGAATCTGGCTCAGGTAAGACGA
CAATTGGCCGTGCTATTTTAAAACTTTACAATATTGATAAAGGAGAAATTGATTTCGAAGGTGAAACGATTTCAAAATTA
AAGGGAAAATCATTGTTTAATTTTCGTAAGAAAGCGCAAATGATTTTCCAAGATCCTCAAGCCAGCTTGAATAGTCGCAT
GAAAGTTAGGGATATTATTGCTGAAGGACTTGATGTTCATAAATTGGTTAAAAATAAGGCAGACCGTGACGCAAAAGTTC
AGGATTTACTGGATCTGGTTGGGTTAAATAAGGATCATTTAACACGTTATCCGCATGAATTTTCAGGCGGTCAGCGTCAA
CGGATTGGGATTGCTCGTGCTTTGGCGGTTGAGCCTAAATTCATTATTGCTGATGAGCCCATCTCTGCTTTGGATGTCTC
TATCCAAGCTCAGGTTGTTAATCTCATGCAAAAACTGCAGCATGAACAGGGACTAACGTACCTGTTCATTGCTCATGATT
TATCAATGGTTAAGTATATTTCGGATCGCATTGGTGTGATGCATTGGGGAAAAATTGTGGAAATTGGGACATCTGATGAG
GTTTACCATCACCCCATTCATCCTTATACTCAAAGTCTCTTATCAGCTGTTCCTGAACCCGATCCAGTTTTAGAACGTCA
ACGTATTCATAAAGTTTATGACCCAGTTGATGAGTTAGATGGGCAGGAACGGGAAATGAGAGAAATTGTACCGGGGCATT
TTGTTTTAGCAACAGAAGAAGAGGCAAAAGCCTATAAGAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

56.066

99.026

0.555
  amiF Streptococcus thermophilus LMG 18311

55.738

99.026

0.552
  amiF Streptococcus salivarius strain HSISS4

55.738

99.026

0.552

Multiple sequence alignment