Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   FSC11_RS13255 Genome accession   NZ_CP044483
Coordinates   2770511..2772748 (+) Length   745 a.a.
NCBI ID   WP_163167370.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE30-1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2765511..2777748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC11_RS13235 (FSC11_13260) lnt 2766245..2767807 (+) 1563 WP_071320704.1 apolipoprotein N-acyltransferase -
  FSC11_RS13240 (FSC11_13265) - 2767994..2768329 (-) 336 WP_004890469.1 hypothetical protein -
  FSC11_RS13245 (FSC11_13270) gspG 2768614..2769081 (-) 468 WP_227499334.1 type II secretion system major pseudopilin GspG -
  FSC11_RS13250 (FSC11_13275) gspF 2769170..2770375 (-) 1206 WP_163167368.1 type II secretion system inner membrane protein GspF -
  FSC11_RS13255 (FSC11_13280) priA 2770511..2772748 (+) 2238 WP_163167370.1 primosomal protein N' Machinery gene
  FSC11_RS13260 (FSC11_13285) - 2772790..2774643 (+) 1854 WP_163167372.1 cation:proton antiporter -
  FSC11_RS13265 (FSC11_13290) hslO 2774694..2775569 (+) 876 WP_163167374.1 Hsp33 family molecular chaperone HslO -
  FSC11_RS13270 (FSC11_13295) - 2776030..2776494 (+) 465 WP_163167376.1 DUF2147 domain-containing protein -
  FSC11_RS13275 (FSC11_13300) - 2776689..2777150 (+) 462 WP_004813478.1 DUF2147 domain-containing protein -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 84543.45 Da        Isoelectric Point: 8.5524

>NTDB_id=390266 FSC11_RS13255 WP_163167370.1 2770511..2772748(+) (priA) [Acinetobacter schindleri strain HZE30-1]
MPHLPISDHPASTPSVYRVRVAVPVHLFDCFDYSLSAAQYQQAEVGARVAVSFGRQNLVGVIMEKLPPDTPLDSSFKLKE
ITELLDDRALIDDKVLNLLNWSAQYYQFPIGEVVQSALPTLLRQGKPYNLLARNWKLLDDQAEAKVRRSERQQEAYKILK
LHPVGTTETVLNLAGIETATLKALEKKRICECVLEAQDFSPQPVQLAQMPLTANPEQQHAIQQVLKFKNKYQAFLLDGLT
GSGKTEVYLQIMEKVLKQGKQVLVLVPEIGLTPQTINRFQSRFHCHIALLHSGLNDSKRLQAWQAAETGKASIVLGTRSA
IYTPMPNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVLLGSATPSIDTYALVANGKMQVLELNQRAGTALM
PKIHILDLKVAQKQHGISLHLIQEIRKRLEKKEQVLVFLNRRGYAPVLICDSCGWQAQCPNCDANFTVHRQPYQHLHCHH
CGTLHRMPDHCSSCNHTELKTLGMGTGKVEEQLNELFPDHEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKG
HHFPYVTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVTDNYRAFAKQTLEQR
QIARMPPYRYAVMIRCESRDQALNTEFLQKHAAFLRQYQDLQLEIWGPIPAPMERKAGRYQSHMVLLSADRPRLHYYIRA
WWQAMLQDKPSSMKLSLDVDPQELS

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=390266 FSC11_RS13255 WP_163167370.1 2770511..2772748(+) (priA) [Acinetobacter schindleri strain HZE30-1]
ATGCCTCACTTGCCCATCTCAGATCACCCAGCCTCAACTCCTTCAGTTTATCGTGTTCGTGTTGCTGTTCCTGTTCATCT
GTTTGACTGTTTTGATTACAGTTTAAGTGCGGCACAATATCAGCAGGCTGAGGTTGGTGCGCGCGTGGCGGTGTCTTTCG
GGCGGCAGAATCTGGTTGGGGTCATTATGGAAAAGCTGCCGCCAGACACTCCGCTAGATTCCAGTTTTAAACTTAAAGAG
ATTACTGAATTACTGGATGACCGGGCACTCATTGATGACAAGGTACTGAATCTGCTGAACTGGTCAGCGCAGTATTACCA
GTTCCCGATTGGTGAAGTGGTGCAAAGTGCCTTGCCAACCTTATTACGTCAGGGTAAGCCCTATAACCTGCTGGCCCGGA
ACTGGAAACTGTTAGATGACCAGGCAGAAGCCAAGGTGCGCCGTTCCGAGCGTCAGCAGGAAGCCTATAAAATTTTAAAA
TTGCATCCAGTCGGTACCACTGAAACTGTACTGAACCTGGCAGGGATCGAAACAGCTACCCTAAAAGCTTTAGAGAAAAA
AAGAATTTGTGAATGTGTGCTGGAAGCACAGGATTTCAGCCCGCAGCCTGTTCAACTGGCACAAATGCCGCTTACAGCCA
ATCCGGAACAGCAGCATGCCATTCAGCAGGTGCTGAAATTTAAAAATAAATATCAGGCTTTCTTACTGGATGGTCTGACC
GGCAGCGGCAAGACTGAAGTTTATTTGCAGATCATGGAAAAGGTGCTGAAACAGGGAAAACAGGTTTTAGTGCTGGTACC
GGAAATTGGCCTGACGCCACAAACCATTAACCGGTTCCAGTCACGTTTCCATTGTCATATTGCCTTGTTACATTCTGGTT
TAAATGACTCGAAACGTCTGCAAGCCTGGCAAGCTGCAGAAACCGGTAAAGCCTCGATTGTGCTGGGTACCCGTTCTGCC
ATTTATACCCCGATGCCTAATCTGGGGCTGATCATCCTGGATGAGGAACATGATCTGTCCTTTAAACAGCAGGAAGGCTT
CCGTTATCATGCCCGAGATGTTGCGCTTTATCGCGGGCATTTGCAGCAATGTCCGGTGCTTCTGGGCTCTGCCACACCCA
GCATCGATACGTATGCACTGGTTGCCAATGGCAAAATGCAGGTACTGGAACTTAACCAGCGTGCTGGTACAGCCTTAATG
CCAAAGATTCATATTTTAGATTTAAAGGTGGCACAGAAACAGCATGGCATCAGCCTGCATCTGATTCAGGAAATACGCAA
ACGTCTGGAAAAAAAGGAACAGGTACTGGTGTTCCTGAACCGCCGTGGTTATGCACCCGTTTTGATTTGTGACAGCTGTG
GCTGGCAGGCACAGTGTCCAAACTGTGATGCCAATTTCACTGTACACCGTCAGCCATATCAACATTTGCATTGTCACCAT
TGTGGCACCCTGCACCGTATGCCGGATCATTGTTCAAGCTGCAATCATACTGAACTCAAAACACTCGGCATGGGAACCGG
CAAGGTCGAAGAGCAATTGAATGAACTCTTTCCCGATCATGAAGTCATTCGGGTAGATCGTGACTCTACCAGTCGGGTCG
GTAGCTGGCAGAAAATCTATGACAAGATTCAGAAAAGCGAACCGGCGATTTTGCTCGGTACGCAAATGCTGGCCAAAGGT
CACCATTTCCCCTATGTCACACTGGTCGCTATTTTAGATATTGATTCTGGTCTGCTCAGTGTGGACTTCCGTGCCACCGA
ACGCACTGCCCAACTGATTGTACAGGTGGCTGGTCGTGCCGGTCGTGGCGAGCATAAAGGTGATGTCTATCTACAGACCT
TACGTCCTGATCATGCTTTGCTAAATACCTTGGTGACAGATAATTACCGGGCTTTTGCCAAACAGACCTTAGAGCAGCGT
CAGATTGCCCGCATGCCACCCTATCGCTATGCAGTGATGATCCGTTGCGAATCACGTGATCAGGCATTAAATACAGAGTT
CTTACAGAAACATGCTGCCTTCTTAAGGCAGTATCAGGACCTGCAACTCGAGATCTGGGGACCTATTCCCGCACCAATGG
AACGCAAGGCGGGCCGTTACCAATCACATATGGTACTACTGTCTGCAGACCGTCCACGTTTGCACTATTATATCAGGGCA
TGGTGGCAAGCCATGCTGCAAGACAAGCCTTCCTCAATGAAGTTAAGCCTGGATGTCGATCCACAAGAGCTGAGCTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(647-741)

Type III restriction enzyme, res subunit (ResIII)

(214-374)

3DNA-binding domain (3BD) (PriA_3primeBD)

(20-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

70.596

99.06

0.699

Multiple sequence alignment