Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FSC12_RS09515 Genome accession   NZ_CP044474
Coordinates   2005772..2006407 (-) Length   211 a.a.
NCBI ID   WP_163169136.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE33-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2000772..2011407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC12_RS09480 (FSC12_09565) mlaE 2000898..2001677 (+) 780 WP_163169133.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  FSC12_RS09485 (FSC12_09570) - 2001677..2002354 (+) 678 WP_163169135.1 outer membrane lipid asymmetry maintenance protein MlaD -
  FSC12_RS09490 (FSC12_09575) - 2002372..2003007 (+) 636 WP_103799832.1 phospholipid-binding protein MlaC -
  FSC12_RS09495 (FSC12_09580) - 2003020..2003310 (+) 291 WP_008303021.1 STAS domain-containing protein -
  FSC12_RS09500 (FSC12_09585) - 2003580..2004593 (-) 1014 WP_004809844.1 CorA family divalent cation transporter -
  FSC12_RS09505 (FSC12_09590) - 2004747..2005337 (+) 591 WP_076754391.1 TIGR00730 family Rossman fold protein -
  FSC12_RS09510 (FSC12_09595) - 2005369..2005770 (+) 402 WP_076754388.1 NUDIX domain-containing protein -
  FSC12_RS09515 (FSC12_09600) comF 2005772..2006407 (-) 636 WP_163169136.1 ComF family protein Machinery gene
  FSC12_RS09520 (FSC12_09605) recG 2006394..2008439 (-) 2046 WP_163169137.1 ATP-dependent DNA helicase RecG -
  FSC12_RS09525 (FSC12_09610) - 2008474..2009292 (+) 819 WP_163169138.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24289.40 Da        Isoelectric Point: 9.3456

>NTDB_id=390218 FSC12_RS09515 WP_163169136.1 2005772..2006407(-) (comF) [Acinetobacter schindleri strain HZE33-1]
MPMSKLIQQGKHWLGKLQPCQLCHNDYQTIYSVCQDCWNQLPWAHQTIQRQEMQVQIACHYDYPMDRLIQLFKYEQKLYL
ENLLAGALISLKLPKVSAVVPMPISTDKLVQRGYNQSLLLAKQVAKHLQVPVWQPVSRLKQHSQKGLSRLERIEDIEAQF
QISTSSKLRYRKVLIIDDVVTTGSSIRALNQKLEELGCQQIYTACVAGAKL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=390218 FSC12_RS09515 WP_163169136.1 2005772..2006407(-) (comF) [Acinetobacter schindleri strain HZE33-1]
ATGCCTATGTCTAAACTGATTCAGCAAGGCAAGCATTGGCTGGGCAAGTTACAACCCTGCCAGCTTTGTCACAACGATTA
TCAAACAATTTACTCAGTATGCCAGGATTGCTGGAACCAGTTACCCTGGGCACATCAGACCATCCAGCGCCAGGAAATGC
AGGTACAGATTGCCTGCCATTATGATTATCCGATGGATCGTCTGATTCAGTTGTTCAAATATGAGCAGAAGCTTTATCTG
GAAAACTTGTTAGCAGGTGCGCTTATCAGTTTAAAACTTCCCAAAGTCAGCGCAGTCGTTCCGATGCCAATCTCGACAGA
CAAATTGGTACAGCGCGGCTATAACCAGTCCTTACTGCTGGCTAAACAGGTCGCAAAGCATCTTCAAGTTCCAGTATGGC
AACCGGTGAGCCGGCTCAAACAGCATTCACAAAAAGGCTTAAGCCGCCTGGAACGGATTGAAGATATTGAAGCACAATTT
CAGATCAGTACATCATCAAAATTGCGTTATCGTAAAGTACTGATTATTGATGATGTGGTAACAACTGGCAGTTCAATTCG
TGCACTTAATCAGAAGCTCGAAGAACTTGGCTGCCAGCAAATTTATACAGCCTGTGTCGCAGGTGCAAAGCTTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.622

91.469

0.555
  comF Acinetobacter baumannii D1279779

60.104

91.469

0.55

Multiple sequence alignment