Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   FSC10_RS13490 Genome accession   NZ_CP044463
Coordinates   2807423..2809660 (+) Length   745 a.a.
NCBI ID   WP_163172325.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE23-1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2802423..2814660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC10_RS13470 (FSC10_13520) lnt 2803141..2804703 (+) 1563 WP_163172318.1 apolipoprotein N-acyltransferase -
  FSC10_RS13475 (FSC10_13525) - 2804906..2805241 (-) 336 WP_163172320.1 hypothetical protein -
  FSC10_RS13480 (FSC10_13530) gspG 2805526..2805993 (-) 468 WP_227499334.1 type II secretion system major pseudopilin GspG -
  FSC10_RS13485 (FSC10_13535) gspF 2806082..2807287 (-) 1206 WP_163172322.1 type II secretion system inner membrane protein GspF -
  FSC10_RS13490 (FSC10_13540) priA 2807423..2809660 (+) 2238 WP_163172325.1 primosomal protein N' Machinery gene
  FSC10_RS13495 (FSC10_13545) - 2809702..2811555 (+) 1854 WP_163172327.1 cation:proton antiporter -
  FSC10_RS13500 (FSC10_13550) hslO 2811606..2812481 (+) 876 WP_004813475.1 Hsp33 family molecular chaperone HslO -
  FSC10_RS13505 (FSC10_13555) - 2812942..2813406 (+) 465 WP_163172329.1 DUF2147 domain-containing protein -
  FSC10_RS13510 (FSC10_13560) - 2813601..2814062 (+) 462 WP_004813478.1 DUF2147 domain-containing protein -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 84439.34 Da        Isoelectric Point: 8.4598

>NTDB_id=390183 FSC10_RS13490 WP_163172325.1 2807423..2809660(+) (priA) [Acinetobacter schindleri strain HZE23-1]
MPHLPISDHPASTPSVYRVRVAVPVHLFDCFDYSLSAAQYQQAEVGARVAVSFGRQNLVGVIMEKLPPDTPLDSSFKLKE
ITELLDDRALIDDKVLNLLNWSAQYYQFPIGEVVQSALPTLLRQGKPYNLLARNWKLLDDQAEAKVRRSERQQEAYKILK
LHPVGTTETVLNLAGIETATLKALEKKGICECVLEPQDFSPQPVQLAQMPLTANPEQQHAIQQVLKFKNKYQAFLLDGLT
GSGKTEVYLQIMEKVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAETGKASIVLGTRSA
IYTPMPNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVLLGSATPSIDTYALVANGKMQVLELNQRAGTALM
PKIHILDLKVAQKQHGISVHLIQEIRKRLEKKEQVLVFLNRRGYAPVLICDSCGWQAQCPNCDANFTVHRQPYQHLHCHH
CGTLHRMPDHCPSCNHTELKTLGMGTGKVEEQLNELFPDHEIIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKG
HHFPYVTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVTDNYRAFAKQTLEQR
QIARMPPYRYAVMIRCESRDQALNTEFLQKHAAFLRQYQDLQLEIWGPIPAPMERKAGRYQSHMVLLSADRPRLHYYVRA
WWQAMLQDKPSSMKLSLDVDPQELS

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=390183 FSC10_RS13490 WP_163172325.1 2807423..2809660(+) (priA) [Acinetobacter schindleri strain HZE23-1]
ATGCCTCACTTGCCCATCTCAGATCACCCAGCCTCAACTCCTTCAGTTTATCGTGTTCGTGTTGCTGTTCCTGTTCATCT
GTTTGACTGTTTTGATTACAGTTTAAGTGCGGCACAATATCAGCAGGCTGAGGTTGGTGCGCGCGTGGCGGTGTCTTTCG
GGCGGCAGAATCTGGTTGGGGTCATTATGGAAAAGCTACCGCCAGACACTCCGCTAGATTCCAGTTTTAAACTTAAAGAG
ATTACTGAATTACTGGATGACCGGGCACTCATTGATGACAAGGTACTGAATCTGCTGAACTGGTCAGCGCAGTATTACCA
GTTCCCGATTGGTGAAGTGGTGCAAAGTGCCTTGCCAACCTTATTACGTCAGGGTAAGCCCTATAACCTGCTGGCCCGGA
ACTGGAAACTGTTAGATGACCAGGCAGAAGCCAAGGTGCGCCGTTCCGAGCGTCAGCAGGAAGCCTATAAAATTTTAAAA
TTGCATCCAGTCGGTACCACTGAAACTGTACTGAACCTGGCAGGGATCGAAACAGCTACCCTAAAAGCTTTAGAGAAAAA
AGGAATTTGTGAATGTGTGCTGGAACCTCAGGATTTCAGCCCGCAGCCTGTTCAATTGGCACAAATGCCGCTTACAGCCA
ATCCGGAACAGCAGCATGCCATTCAACAGGTACTGAAATTTAAAAATAAATATCAGGCCTTTTTACTGGATGGTCTGACC
GGCAGCGGCAAGACTGAAGTTTATTTGCAGATCATGGAAAAGGTGCTGAAACAGGGAAAACAGGTTTTAGTGCTGGTACC
GGAAATTGGCCTGACGCCACAAACCATTAGCCGGTTCCAGTCACGTTTCCATTGTCATATTGCCTTGTTACATTCTGGTT
TAAATGACTCGAAACGTCTGCAAGCCTGGCAAGCTGCAGAAACCGGTAAAGCCTCGATTGTGCTGGGTACCCGTTCTGCC
ATTTATACCCCGATGCCCAATCTAGGATTGATCATCCTGGATGAGGAACATGATCTGTCTTTTAAACAGCAGGAAGGCTT
CCGTTATCATGCCCGAGATGTTGCGCTTTATCGCGGGCATTTGCAGCAATGTCCGGTGCTTCTGGGCTCTGCCACACCCA
GCATCGATACGTATGCACTGGTTGCCAATGGCAAAATGCAGGTACTGGAACTTAACCAGCGTGCTGGTACAGCCTTAATG
CCAAAAATTCATATTTTAGATTTAAAGGTGGCACAGAAACAGCATGGCATCAGCGTGCATCTGATTCAGGAAATACGCAA
ACGTCTGGAAAAAAAGGAACAGGTACTGGTATTCCTGAACCGCCGTGGTTATGCACCCGTTTTGATTTGTGACAGCTGTG
GCTGGCAGGCACAGTGTCCAAACTGTGATGCCAATTTCACTGTACACCGTCAGCCATATCAACATTTGCATTGTCACCAT
TGTGGCACCCTGCACCGTATGCCGGATCATTGTCCAAGCTGCAATCATACTGAACTCAAAACACTCGGCATGGGAACCGG
CAAGGTCGAAGAGCAATTGAATGAACTCTTTCCCGATCATGAAATCATTCGGGTAGATCGTGACTCTACCAGCCGGGTCG
GTAGCTGGCAGAAAATCTATGACAAGATTCAGAAAAGCGAGCCGGCGATTTTACTCGGTACGCAAATGCTGGCCAAAGGT
CACCATTTCCCCTATGTCACACTGGTCGCTATTTTAGATATTGATTCTGGTCTGCTCAGTGTAGACTTCCGTGCCACCGA
ACGCACTGCCCAACTGATTGTACAGGTGGCTGGTCGTGCCGGTCGTGGCGAGCACAAGGGTGATGTCTATCTACAGACCT
TACGTCCTGATCATGCTTTGCTAAATACCTTGGTGACAGATAATTACCGGGCTTTTGCTAAACAGACCTTAGAGCAGCGC
CAGATTGCCCGCATGCCACCCTATCGCTATGCAGTGATGATCCGTTGCGAATCACGTGATCAGGCATTAAATACAGAGTT
CTTACAGAAACATGCTGCCTTCTTAAGGCAGTATCAGGACCTGCAACTGGAGATCTGGGGACCTATTCCAGCACCAATGG
AACGCAAGGCGGGCCGTTACCAATCACATATGGTACTACTGTCTGCAGACCGTCCACGTTTGCACTATTATGTCAGGGCA
TGGTGGCAAGCCATGCTGCAAGACAAGCCTTCCTCAATGAAGTTAAGTCTGGATGTCGATCCACAAGAGCTGAGCTAG

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(20-119)

Primosomal protein N C-terminal domain (PriA_C)

(647-741)

Type III restriction enzyme, res subunit (ResIII)

(214-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.003

99.06

0.703

Multiple sequence alignment