Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   FSC10_RS01335 Genome accession   NZ_CP044463
Coordinates   270878..272443 (-) Length   521 a.a.
NCBI ID   WP_071319759.1    Uniprot ID   A0AAE7BVH8
Organism   Acinetobacter schindleri strain HZE23-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 265878..277443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC10_RS01320 (FSC10_01345) gpmI 266663..268213 (+) 1551 WP_103799968.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  FSC10_RS01325 (FSC10_01350) - 268236..269408 (+) 1173 WP_163170762.1 S41 family peptidase -
  FSC10_RS01330 (FSC10_01355) pilR 269435..270853 (-) 1419 WP_008306852.1 sigma-54-dependent transcriptional regulator Regulator
  FSC10_RS01335 (FSC10_01360) pilS 270878..272443 (-) 1566 WP_071319759.1 two-component system sensor histidine kinase NtrB Regulator
  FSC10_RS01340 (FSC10_01365) - 272493..273128 (-) 636 WP_004810139.1 response regulator -
  FSC10_RS01345 (FSC10_01370) - 273352..274407 (+) 1056 WP_026056747.1 serine hydrolase -
  FSC10_RS01350 (FSC10_01375) thrC 274472..275611 (-) 1140 WP_004810136.1 threonine synthase -
  FSC10_RS01355 (FSC10_01380) - 275668..276972 (-) 1305 WP_004810134.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59316.65 Da        Isoelectric Point: 6.2925

>NTDB_id=390153 FSC10_RS01335 WP_071319759.1 270878..272443(-) (pilS) [Acinetobacter schindleri strain HZE23-1]
MSQRSSYSELNQYLLGTWYAAYRLIISTGLLLIFVLTYPEHTSDLEYPKLYHYVLSSFIAIALIQLFVLKYFKKFVQQQL
TGIFIVDVCALSLLTLATNGTNLQLSMLFVITIFAASILLNAQKALVITLIAVISVIYQHFITSLFTLSSLGNIGNSAIL
AFMFFVVYGIGQIAVRRFQILENVNFSQSMELYRLQNINRYILEQIETGYLVLDENCHVVLSNPAACHLLGIQQMYAHDT
FPLYQSQPDLFELIRFEDLENGERFQFESQQSRFNIHVQVQKLIVPHQTLMLLVLQDAQKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLLPGCEQDQQQVLHGMISKQATRINRIIEDTLNMVKNKETHPVSIQLNEFIPQCIHEDLADIAD
QIKLNIDMRLDIQFDEAQLRQVLVNLLRNAVRHNDPAVGYVELKVHPYEHKVWIDVRDFGQGVAPADQSLLFKPFFSTSI
NGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITV

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=390153 FSC10_RS01335 WP_071319759.1 270878..272443(-) (pilS) [Acinetobacter schindleri strain HZE23-1]
ATGTCGCAGCGATCTTCTTATTCAGAGCTTAACCAATATCTGCTGGGCACTTGGTATGCGGCATACCGCCTGATCATCAG
TACTGGTTTACTGCTGATTTTCGTGCTCACTTATCCTGAGCACACCAGCGATTTAGAATATCCCAAGCTGTATCATTATG
TACTGAGTAGCTTCATTGCTATCGCCTTGATCCAGCTTTTTGTTCTGAAGTATTTTAAGAAATTTGTTCAGCAACAGCTG
ACCGGTATTTTTATTGTCGATGTCTGTGCACTCAGCCTGCTGACCTTGGCCACGAATGGCACCAATCTACAGCTCAGTAT
GCTATTCGTGATTACTATCTTTGCCGCTTCCATTTTACTGAATGCACAAAAAGCGCTGGTGATTACCTTGATTGCGGTCA
TCAGTGTGATTTACCAGCATTTCATCACCAGCCTGTTTACCCTTTCCTCTCTGGGTAATATCGGCAATAGCGCCATATTG
GCTTTTATGTTTTTTGTGGTCTATGGCATCGGGCAAATTGCAGTCCGACGTTTCCAGATCTTGGAAAATGTCAATTTTTC
CCAGTCCATGGAACTTTATCGTCTACAAAATATTAACCGTTATATTCTGGAACAGATTGAGACTGGTTATCTGGTTCTCG
ATGAAAACTGTCATGTGGTGCTGAGTAATCCTGCTGCCTGCCACTTGCTTGGCATCCAGCAAATGTATGCACATGACACG
TTTCCATTGTACCAGTCACAACCAGATCTGTTTGAGCTGATCCGCTTTGAAGATCTGGAAAATGGCGAACGCTTTCAGTT
TGAATCCCAGCAAAGCCGTTTCAATATTCATGTTCAAGTACAAAAACTGATTGTACCGCATCAAACTTTAATGTTGCTGG
TGCTGCAAGATGCGCAAAAACTTAATCAACAAGTCCAGCAATTAAAACTGGCGGCACTCGGGCAACTTTCTGCCAGTATT
GCTCATGAGATTCGTAATCCGCTTGCAGCGATTGTTCAAGCCAATGATCTGTTACCTGGTTGTGAACAGGACCAGCAGCA
GGTGTTGCATGGCATGATCAGCAAGCAGGCAACACGAATCAACCGGATTATTGAAGACACGCTGAATATGGTGAAGAATA
AAGAGACTCATCCAGTATCTATTCAGCTGAATGAATTTATTCCACAATGTATCCATGAGGATTTGGCTGATATTGCTGAT
CAGATTAAGCTGAATATTGATATGCGACTGGACATCCAGTTTGATGAAGCCCAGCTACGTCAAGTATTGGTCAATTTATT
GCGTAATGCCGTGCGGCATAACGATCCAGCCGTAGGCTATGTAGAATTAAAAGTTCATCCTTATGAACATAAAGTCTGGA
TTGATGTACGGGATTTTGGTCAGGGTGTGGCGCCTGCCGATCAGAGTCTGCTGTTTAAACCATTTTTCAGCACTTCAATT
AATGGTACAGGACTAGGGCTATATTTATCCCACAGTTTCTGTGAGGCCAATCAGGCCCAGCTGAATTATATACAACAAGA
ACAGGGTGCCTGCTTCCGGATTAGCTGCCAGCGCATCACTGTTTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

57.426

96.929

0.557

Multiple sequence alignment