Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FSC10_RS01330 Genome accession   NZ_CP044463
Coordinates   269435..270853 (-) Length   472 a.a.
NCBI ID   WP_008306852.1    Uniprot ID   A0AAE7BVJ0
Organism   Acinetobacter schindleri strain HZE23-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 264435..275853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC10_RS01315 (FSC10_01340) lptG 265468..266538 (+) 1071 WP_163170761.1 LPS export ABC transporter permease LptG -
  FSC10_RS01320 (FSC10_01345) gpmI 266663..268213 (+) 1551 WP_103799968.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  FSC10_RS01325 (FSC10_01350) - 268236..269408 (+) 1173 WP_163170762.1 S41 family peptidase -
  FSC10_RS01330 (FSC10_01355) pilR 269435..270853 (-) 1419 WP_008306852.1 sigma-54-dependent transcriptional regulator Regulator
  FSC10_RS01335 (FSC10_01360) pilS 270878..272443 (-) 1566 WP_071319759.1 two-component system sensor histidine kinase NtrB Regulator
  FSC10_RS01340 (FSC10_01365) - 272493..273128 (-) 636 WP_004810139.1 response regulator -
  FSC10_RS01345 (FSC10_01370) - 273352..274407 (+) 1056 WP_026056747.1 serine hydrolase -
  FSC10_RS01350 (FSC10_01375) thrC 274472..275611 (-) 1140 WP_004810136.1 threonine synthase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53557.55 Da        Isoelectric Point: 6.1261

>NTDB_id=390152 FSC10_RS01330 WP_008306852.1 269435..270853(-) (pilR) [Acinetobacter schindleri strain HZE23-1]
MEQQPLVLLVDDEEDLCTLMQMSLMRMGIRTHIAHRLEDAKKRLADHQYDACLTDLNLPDGNGLQLLEFISEHHPSLPVA
VLTAYGNMDIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYQSNQQDTLEYKMLIGQSKPIQQLRTTLHKIARSQ
APVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPAELMESELFGHKKGSFTGAMQDKQGLIQSAHGGSLFLDEI
AELPLSMQVKLLRAVQEKRIRPLGSDIEIDVDFRVISASHQDLEAQVQQGKFRQDLFFRIHVMDLVLPPLRERGNDILLL
AEHFIQKICQEWQIPVKRLTERSKEQLLTQYYPGNVRELRNIIERAITLSDEDTIDIQHLQTAPLRQSFVTSEITSNIAS
ESSNTTDTFIVPKKLPEEGLELYMEKIEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDEEE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=390152 FSC10_RS01330 WP_008306852.1 269435..270853(-) (pilR) [Acinetobacter schindleri strain HZE23-1]
GTGGAACAACAACCACTGGTACTATTGGTCGATGATGAAGAAGATCTCTGTACGCTCATGCAGATGTCGCTCATGCGTAT
GGGAATTCGCACGCATATCGCCCATCGTCTGGAGGATGCTAAAAAACGCCTGGCAGATCATCAGTATGATGCCTGCCTTA
CGGACTTGAATCTGCCTGATGGTAATGGCTTGCAGCTACTGGAATTTATCAGTGAGCATCATCCTTCCCTACCGGTTGCT
GTGTTAACTGCCTATGGCAATATGGATATTGCCATTGCTGCACTCAAGGCAGGTGCCTTTGATTTTGTCAGTAAGCCGAT
CAATCAGAAACATCTGGAGCAGTTACTGCAAAAGGCACTAAATAAGCCAGTAGATTACCAATCCAATCAGCAAGATACCC
TAGAATATAAAATGCTGATTGGCCAGTCCAAGCCGATTCAGCAATTACGTACGACTTTGCATAAAATTGCCCGCTCTCAA
GCCCCGGTATTTATTACCGGTGAATCTGGTACAGGTAAAGAAGTTGTAGCAAATCTGGTTCATCGCCTCAGTAACCGGAG
TGAAGGACCCTTTATTGCCATTAACTGTGGCGCAATTCCAGCTGAACTGATGGAAAGTGAGCTATTCGGGCACAAGAAAG
GCAGCTTTACTGGCGCCATGCAGGACAAACAGGGCCTAATCCAGTCTGCACATGGCGGCAGTTTATTTCTGGATGAAATT
GCAGAACTTCCACTCAGTATGCAGGTCAAACTGCTACGTGCAGTACAGGAAAAACGGATTCGCCCTTTAGGTTCAGATAT
TGAAATTGATGTGGATTTTCGTGTCATCAGCGCCAGTCATCAGGACCTGGAAGCACAGGTACAGCAAGGTAAATTCCGTC
AGGATTTATTCTTCCGCATTCATGTGATGGATCTGGTGTTGCCACCATTACGTGAGCGTGGTAATGACATTCTGCTGCTG
GCTGAACACTTTATTCAGAAGATCTGTCAGGAATGGCAAATCCCTGTGAAACGCCTGACTGAGCGTAGCAAAGAGCAGTT
ACTGACTCAATACTATCCAGGAAATGTCCGGGAATTGCGTAATATCATCGAGCGAGCTATTACCCTCAGCGATGAAGACA
CAATTGATATCCAGCATTTGCAAACTGCACCTTTACGTCAGAGTTTTGTGACTTCCGAAATCACATCGAATATAGCATCC
GAATCGAGTAACACTACTGACACTTTTATCGTACCAAAAAAACTGCCTGAAGAAGGTCTTGAACTGTATATGGAGAAAAT
CGAGAAAGAAATTTTGCTAAATGCATTGAATCTGACTCACTGGAACCGTACGCTTGCCGCAAAAAAGTTAGGCATGTCTT
TCCGATCGCTGCGTTATCGTCTGAAGAAATTTGGGCTCGATACCGATGAAGAAGAATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-305)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.895

100

0.752
  pilR Pseudomonas aeruginosa PAK

48.188

99.364

0.479

Multiple sequence alignment