Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   HJD23_RS24485 Genome accession   NZ_CP053109
Coordinates   5458993..5459991 (+) Length   332 a.a.
NCBI ID   WP_171116619.1    Uniprot ID   -
Organism   Streptomyces sp. Z423-1     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5453993..5464991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJD23_RS24460 - 5454410..5455054 (+) 645 WP_171116610.1 TetR/AcrR family transcriptional regulator -
  HJD23_RS24465 - 5455193..5456722 (+) 1530 WP_171116611.1 MFS transporter -
  HJD23_RS24470 - 5456817..5457344 (-) 528 WP_171116613.1 MarR family transcriptional regulator -
  HJD23_RS24475 - 5457461..5458252 (+) 792 WP_171116615.1 class III extradiol ring-cleavage dioxygenase -
  HJD23_RS24480 - 5458291..5458809 (-) 519 WP_171116617.1 GNAT family N-acetyltransferase -
  HJD23_RS24485 rpoS 5458993..5459991 (+) 999 WP_171116619.1 sigma-70 family RNA polymerase sigma factor Regulator
  HJD23_RS24490 - 5460546..5461145 (+) 600 WP_171119019.1 TetR family transcriptional regulator -
  HJD23_RS24495 - 5461162..5462124 (-) 963 WP_171116621.1 YafY family protein -
  HJD23_RS24500 - 5462188..5463729 (+) 1542 WP_171116623.1 MFS transporter -
  HJD23_RS24505 - 5463916..5464677 (+) 762 WP_171116625.1 DeoR/GlpR family DNA-binding transcription regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37285.00 Da        Isoelectric Point: 4.9081

>NTDB_id=390152 HJD23_RS24485 WP_171116619.1 5458993..5459991(+) (rpoS) [Streptomyces sp. Z423-1]
MATRAVARRTSAEGGTVDAASSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLDGYEESKVD
ATREELEALMAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEIADELGSTPERVTDVLDWARDPVSLNMSVDDEGETQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARQTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=390152 HJD23_RS24485 WP_171116619.1 5458993..5459991(+) (rpoS) [Streptomyces sp. Z423-1]
ATGGCAACCCGTGCCGTCGCCCGTCGTACGTCCGCCGAAGGCGGGACCGTCGACGCGGCCAGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCGGACCGCGATCTGGTCGGCATGTACCTCGACGAGATCGCGCGGACGCCGCTGCTCGACGCCGCCAAGG
AGGTCGAGCTTTCCCAGACCATCGAGGCGGGTGTGTTCGCGCGACAGGTCCTCGACGGTTACGAGGAGTCGAAGGTGGAC
GCCACCCGCGAAGAGCTGGAGGCCCTGATGGCCGAGGGCGAGCGGGCCAAGGACGTCTTCATCCGCTCCAACCTCCGCCT
GGTCGTCGCGGTCGCCCGTCGCTACCCGCGCAGCGGCCTGCCCCTGCTGGACCTGATCCAGGAGGGCAACGCGGGCCTGG
TGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCCACCTGGTGGATCCGCCAGGCGATC
ACCCGCTCCATAGCCGACCAGTCGCGCACCATCCGGCTGCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGGCGCGT
GCAGCGCGAGTTCAACCGTGAGCACGGGCGTGACCCGGAGCCCGCGGAGATCGCCGACGAGCTCGGCTCGACGCCCGAGC
GCGTCACCGACGTGCTGGACTGGGCCCGTGACCCGGTCTCGCTGAACATGTCGGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTGCTGGAGGACACGTCGGCGGTCTCCCCCGAGCAGTCCGTGATGACCCTGCTGCGCAGCGAGGAGCTGGACGA
CCTCATCGGCCGCCTCGACCAGCGCACGGCGTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGGGAGCGGACCT
TGACCGAGGTCGGCAAGGAGCACGGCCTGACCCGTGAGCGCATCCGCCAGATCGAGAAGCACGCCCTGCTGGAGCTGAAG
AAGCTGGCACGTCAGACCGGCTTCGACGCCGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 3 (Sigma70_r3)

(179-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

37.771

97.289

0.367

Multiple sequence alignment