Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HJD23_RS17325 Genome accession   NZ_CP053109
Coordinates   3876163..3877572 (+) Length   469 a.a.
NCBI ID   WP_171109110.1    Uniprot ID   -
Organism   Streptomyces sp. Z423-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3871163..3882572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJD23_RS17305 - 3871253..3872077 (-) 825 WP_141314643.1 sugar phosphate isomerase/epimerase -
  HJD23_RS17310 - 3872252..3873184 (-) 933 WP_171109104.1 Ppx/GppA phosphatase family protein -
  HJD23_RS17315 - 3873268..3874149 (+) 882 WP_171109106.1 hypothetical protein -
  HJD23_RS17320 - 3874203..3875939 (-) 1737 WP_171109108.1 hypothetical protein -
  HJD23_RS17325 radA 3876163..3877572 (+) 1410 WP_171109110.1 DNA repair protein RadA Machinery gene
  HJD23_RS17330 disA 3877653..3878777 (+) 1125 WP_141314654.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  HJD23_RS17335 - 3878893..3879744 (-) 852 WP_171109112.1 hypothetical protein -
  HJD23_RS17340 - 3879983..3880930 (+) 948 WP_171109114.1 A/G-specific adenine glycosylase -
  HJD23_RS17345 - 3881184..3881732 (+) 549 WP_171109116.1 SigE family RNA polymerase sigma factor -
  HJD23_RS17350 - 3881720..3882412 (+) 693 WP_171109118.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49652.75 Da        Isoelectric Point: 7.7380

>NTDB_id=390136 HJD23_RS17325 WP_171109110.1 3876163..3877572(+) (radA) [Streptomyces sp. Z423-1]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTIEEYGAPAVRTTAPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLAAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPAGMKVLEVADIGDALRVLPRSRRREAPRDEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=390136 HJD23_RS17325 WP_171109110.1 3876163..3877572(+) (radA) [Streptomyces sp. Z423-1]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGCAGACGGCCAAATGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGATCGAGGAGTACGGCGCGCCCGCGGTGCGGACCACGGCGCCGGGGC
GCGTCACGACGTCCGCGGTGCCCATCGGGCAGGTCGACGGACGGCAGGCGACCGCCCGTTCGACCGGGGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGCCTGGTGCCCGGCGCGGTGGTGCTGGTCGCGGGCGAGCCGGGCGTCGGCAAGTCGACGCT
GCTGCTGGACGTGGCGGCCAAGTCGGCGAGCGACGAGCACCGCACCCTCTATGTGACCGGCGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCGGCGCCATCGACGACCACCTCTATCTCGCCGCCGAGACGGATCTGGCCGCCGTGCTC
GGCCACTTGGACGCGGTGAAGCCGTCGCTGCTGATCATGGACTCGGTGCAGACGGTCGCCTCCCCGGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGCGCCTCGAAGGAACGCGGCATGTCCACGCTCC
TGGTCGGCCATGTCACCAAGGACGGCGCGATCGCGGGCCCGCGCCTCCTGGAGCACCTCGTCGACGTCGTCCTGCACTTC
GAGGGCGACCGGCACGCACGCCTGCGGCTCGTACGCGGTGTCAAGAACCGCTACGGCACGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCAGCGGCCTGTTCCTCACCCGGCGCGCCGAGCCCGTCCCCG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTGGCCGAGGTCCAGGCCCTCACGGTCGACTCCCAGATT
CCCTCCCCGCGCCGTACGACGTCCGGGCTGGAGACCTCCCGCGTCTCGATGATGCTGGCGGTGCTGGAGCAGCGCGGCCG
GATCAGCGCCCTGGGCAAACGGGACATCTACTCCGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCGGCCGCCGACCTCG
CCGTCGCCCTCGCCCTGGCCTCCGCCGCCAGCGACACTCCGCTGCCGAAGAACCTCGTCGCGATCGGCGAGGTCGGCCTC
GCGGGCGAGGTCAGACGGGTCACCGGCGTGCAGCGCAGGCTCGCCGAGGCGCACCGGCTGGGCTTCACGCACGCCCTCGT
ACCGGGCGACCCGGGGAAGGTCCCGGCCGGGATGAAGGTCCTGGAAGTCGCGGACATAGGGGACGCCCTGAGGGTGCTGC
CCCGCTCCCGTCGCCGAGAGGCCCCCCGGGACGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae TIGR4

43.43

95.736

0.416
  radA Streptococcus pneumoniae D39

43.43

95.736

0.416
  radA Streptococcus pneumoniae R6

43.43

95.736

0.416
  radA Streptococcus pneumoniae Rx1

43.43

95.736

0.416
  radA Streptococcus mitis SK321

43.43

95.736

0.416
  radA Streptococcus mitis NCTC 12261

43.43

95.736

0.416
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.375

0.414

Multiple sequence alignment