Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FSC09_RS01670 Genome accession   NZ_CP044455
Coordinates   340944..341579 (-) Length   211 a.a.
NCBI ID   WP_163141102.1    Uniprot ID   -
Organism   Acinetobacter indicus strain B18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335944..346579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC09_RS01635 (FSC09_01645) mlaE 336218..336997 (+) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  FSC09_RS01640 (FSC09_01650) - 336997..337668 (+) 672 WP_016658517.1 outer membrane lipid asymmetry maintenance protein MlaD -
  FSC09_RS01645 (FSC09_01655) - 337687..338319 (+) 633 WP_005180322.1 phospholipid-binding protein MlaC -
  FSC09_RS01650 (FSC09_01660) - 338331..338618 (+) 288 WP_163141096.1 STAS domain-containing protein -
  FSC09_RS01655 (FSC09_01665) - 338758..339771 (-) 1014 WP_005180320.1 CorA family divalent cation transporter -
  FSC09_RS01660 (FSC09_01670) - 339924..340517 (+) 594 WP_005180318.1 TIGR00730 family Rossman fold protein -
  FSC09_RS01665 (FSC09_01675) - 340520..340921 (+) 402 WP_163141099.1 NUDIX hydrolase -
  FSC09_RS01670 (FSC09_01680) comF 340944..341579 (-) 636 WP_163141102.1 ComF family protein Machinery gene
  FSC09_RS01675 (FSC09_01685) recG 341566..343611 (-) 2046 WP_005180314.1 ATP-dependent DNA helicase RecG -
  FSC09_RS01680 (FSC09_01690) - 343645..344460 (+) 816 WP_127799315.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24389.42 Da        Isoelectric Point: 9.2088

>NTDB_id=390112 FSC09_RS01670 WP_163141102.1 340944..341579(-) (comF) [Acinetobacter indicus strain B18]
MPMFKLLAHSHTLFKKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QPLLAGSLCELAYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDAGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=390112 FSC09_RS01670 WP_163141102.1 340944..341579(-) (comF) [Acinetobacter indicus strain B18]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCATACGCTCTTTAAAAAGTTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGACTGTTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAATTGCATTAT
CAGCCTTTACTGGCGGGCAGCCTGTGTGAATTGGCCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
GCGACTGGCAGAGCGTGGCTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGCTTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTGCGACCCGATGCCGGCCGGCCTTATCGCCGGGTATTAATTGTTGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCACTGAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGATGGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

55.502

99.052

0.55
  comF Acinetobacter baumannii D1279779

55.502

99.052

0.55

Multiple sequence alignment