Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   F7V86_RS12880 Genome accession   NZ_CP044444
Coordinates   2468920..2469873 (+) Length   317 a.a.
NCBI ID   WP_014417407.1    Uniprot ID   A0AAP4DIE0
Organism   Bacillus amyloliquefaciens strain KC41     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2463920..2474873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS12850 argF 2465737..2466708 (+) 972 WP_017417442.1 ornithine carbamoyltransferase -
  F7V86_RS12855 - 2466783..2466962 (+) 180 WP_003155070.1 YjzC family protein -
  F7V86_RS12860 - 2466999..2467184 (-) 186 WP_007409129.1 YjzD family protein -
  F7V86_RS12870 - 2467445..2468180 (+) 736 Protein_2442 hypothetical protein -
  F7V86_RS12875 - 2468263..2468829 (+) 567 WP_025649580.1 hypothetical protein -
  F7V86_RS12880 med 2468920..2469873 (+) 954 WP_014417407.1 BMP family ABC transporter substrate-binding protein Regulator
  F7V86_RS12885 comZ 2469886..2470077 (+) 192 WP_003155061.1 ComZ family protein Regulator
  F7V86_RS12890 - 2470106..2470324 (-) 219 WP_007409123.1 hypothetical protein -
  F7V86_RS12895 - 2470492..2471430 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  F7V86_RS12900 fabF 2471452..2472690 (+) 1239 WP_151140229.1 beta-ketoacyl-ACP synthase II -
  F7V86_RS12905 - 2472774..2473559 (+) 786 WP_017417447.1 DUF2268 domain-containing protein -
  F7V86_RS12910 - 2473733..2474719 (+) 987 WP_017417448.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35343.93 Da        Isoelectric Point: 4.6686

>NTDB_id=389990 F7V86_RS12880 WP_014417407.1 2468920..2469873(+) (med) [Bacillus amyloliquefaciens strain KC41]
MITRLVMTFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKNNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNRTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=389990 F7V86_RS12880 WP_014417407.1 2468920..2469873(+) (med) [Bacillus amyloliquefaciens strain KC41]
TTGATCACCAGGCTTGTCATGACCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACTTGGTATGGGGGACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATTTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCATCTTATGGGAGAAGCAA
TGGGCTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAAACAATGAGGTCGGCGTCATCGCCTCTTTTTTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGAGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACAACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACA
AAGCATTTCAAGACAAAATCTCAGACCTTGTCAAAACGTATAACAGAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

77.918

100

0.779

Multiple sequence alignment