Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   F7V86_RS08900 Genome accession   NZ_CP044444
Coordinates   1697490..1697927 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain KC41     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1692490..1702927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS08875 - 1693510..1694646 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  F7V86_RS08880 - 1694661..1695095 (+) 435 WP_014416871.1 RDD family protein -
  F7V86_RS08885 - 1695212..1695490 (+) 279 WP_263612330.1 YckD family protein -
  F7V86_RS08890 - 1695594..1697030 (+) 1437 WP_014416872.1 glycoside hydrolase family 1 protein -
  F7V86_RS08895 nin/comJ 1697071..1697469 (-) 399 WP_017419379.1 competence protein ComJ Regulator
  F7V86_RS08900 nucA/comI 1697490..1697927 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  F7V86_RS08905 hxlB 1698258..1698815 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  F7V86_RS08910 hxlA 1698812..1699447 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  F7V86_RS08915 - 1699679..1700041 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=389977 F7V86_RS08900 WP_003156588.1 1697490..1697927(-) (nucA/comI) [Bacillus amyloliquefaciens strain KC41]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=389977 F7V86_RS08900 WP_003156588.1 1697490..1697927(-) (nucA/comI) [Bacillus amyloliquefaciens strain KC41]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCCGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGTTACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment