Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   F7V86_RS08895 Genome accession   NZ_CP044444
Coordinates   1697071..1697469 (-) Length   132 a.a.
NCBI ID   WP_017419379.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain KC41     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1692071..1702469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS08870 - 1692243..1693445 (+) 1203 WP_151140154.1 GTP-binding protein -
  F7V86_RS08875 - 1693510..1694646 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  F7V86_RS08880 - 1694661..1695095 (+) 435 WP_014416871.1 RDD family protein -
  F7V86_RS08885 - 1695212..1695490 (+) 279 WP_263612330.1 YckD family protein -
  F7V86_RS08890 - 1695594..1697030 (+) 1437 WP_014416872.1 glycoside hydrolase family 1 protein -
  F7V86_RS08895 nin/comJ 1697071..1697469 (-) 399 WP_017419379.1 competence protein ComJ Regulator
  F7V86_RS08900 nucA/comI 1697490..1697927 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  F7V86_RS08905 hxlB 1698258..1698815 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  F7V86_RS08910 hxlA 1698812..1699447 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  F7V86_RS08915 - 1699679..1700041 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14893.89 Da        Isoelectric Point: 4.7846

>NTDB_id=389976 F7V86_RS08895 WP_017419379.1 1697071..1697469(-) (nin/comJ) [Bacillus amyloliquefaciens strain KC41]
MIKSWKPQELAISYHQFTLFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=389976 F7V86_RS08895 WP_017419379.1 1697071..1697469(-) (nin/comJ) [Bacillus amyloliquefaciens strain KC41]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACACTCTTTCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765

Multiple sequence alignment