Detailed information NTG0038992

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MPQ_RS02595
• Genome accession: NC_014733
• Coordinates: 532876..533751 (-)
• Length: 291 a.a.
• NCBI ID: WP_013441338.1
• Uniprot ID: -
• Organism: Methylovorus sp. MP688
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 527876..538751

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPQ_RS02560 (MPQ_0526)	-	528529..529425 (+)	897	WP_013441331.1	ATP-binding protein	-
MPQ_RS02565 (MPQ_0527)	-	529422..530372 (+)	951	WP_013441332.1	Nudix family hydrolase	-
MPQ_RS02570 (MPQ_0528)	-	530359..530796 (+)	438	WP_013441333.1	hypothetical protein	-
MPQ_RS02575 (MPQ_0529)	-	530815..531258 (-)	444	WP_013441334.1	copper chaperone PCu(A)C	-
MPQ_RS02580 (MPQ_0530)	-	531271..531465 (-)	195	WP_041361966.1	DNA gyrase inhibitor YacG	-
MPQ_RS02585 (MPQ_0531)	zapD	531453..532211 (-)	759	WP_013441336.1	cell division protein ZapD	-
MPQ_RS02590 (MPQ_0532)	coaE	532266..532874 (-)	609	WP_013441337.1	dephospho-CoA kinase	-
MPQ_RS02595 (MPQ_0533)	pilD	532876..533751 (-)	876	WP_013441338.1	A24 family peptidase	Machinery gene
MPQ_RS02600 (MPQ_0534)	-	533897..534217 (+)	321	WP_041361967.1	hypothetical protein	-
MPQ_RS02605 (MPQ_0535)	ispB	534332..535300 (-)	969	WP_041361968.1	octaprenyl diphosphate synthase	-
MPQ_RS02610 (MPQ_0536)	rplU	535514..535828 (+)	315	WP_013441341.1	50S ribosomal protein L21	-
MPQ_RS02615 (MPQ_0537)	rpmA	535863..536120 (+)	258	WP_013441342.1	50S ribosomal protein L27	-
MPQ_RS02620 (MPQ_0538)	cgtA	536247..537299 (+)	1053	WP_013441343.1	Obg family GTPase CgtA	-
MPQ_RS02625 (MPQ_0539)	proB	537280..538398 (+)	1119	WP_013441344.1	glutamate 5-kinase	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 31348.21 Da
• Isoelectric Point: 8.0284

>NTDB_id=38992 MPQ_RS02595 WP_013441338.1 532876..533751(-) (pilD) [Methylovorus sp. MP688]
MPDVISNFLQVLQDSPAFFIAVSALLGLLVGSFLNVVIHRLPKMMEAEWRLNCQSLDGQTPSEPPKKFNLLTPRSSCPHC
GHAITAIENIPLISYLGLRGKCRACKAPISLRYPAVELLTGILTALVSWKLGYGGMTVFAWLFVFALIALTFIDLDTQLL
PDDITLPLLWLGLLVNLNGGFTDLSSAVGGAAAGYLILWSIYWLFKLITGKEGMGYGDFKLLAAIGAWFGWQMLPAVILL
SSLAGSVIGIGLILFARHGRSTPIPFGPYLALGGIAALFFGPTLASFYLGS

Nucleotide

• Length: 876 bp

>NTDB_id=38992 MPQ_RS02595 WP_013441338.1 532876..533751(-) (pilD) [Methylovorus sp. MP688]
ATGCCCGACGTTATTAGCAATTTTCTTCAGGTATTGCAGGACTCCCCTGCCTTTTTTATTGCCGTTTCTGCCCTGCTCGG
GCTTCTGGTAGGCAGCTTTCTGAATGTCGTCATTCATCGGCTACCTAAAATGATGGAAGCGGAATGGCGACTGAATTGCC
AGTCACTCGATGGACAGACACCTTCAGAACCTCCGAAAAAATTCAACCTGCTGACTCCACGTTCCAGCTGTCCGCATTGC
GGACATGCCATCACGGCCATCGAGAACATCCCCCTGATCAGCTACCTGGGCCTGCGCGGCAAATGCCGGGCTTGCAAGGC
GCCTATCAGCTTGCGCTACCCAGCGGTCGAGCTGCTCACCGGCATCCTGACAGCCCTGGTGAGCTGGAAACTAGGCTACG
GCGGCATGACGGTGTTTGCCTGGCTATTTGTTTTTGCATTGATCGCCCTGACCTTCATTGACCTGGATACGCAGCTGCTG
CCTGACGACATTACGCTCCCTTTGCTATGGCTGGGCTTGCTGGTCAATCTCAATGGCGGCTTTACCGACTTATCCTCCGC
CGTGGGTGGCGCCGCAGCCGGATATCTCATCCTGTGGAGCATCTATTGGCTGTTCAAGCTGATAACAGGCAAAGAAGGCA
TGGGCTACGGCGACTTCAAATTGCTTGCCGCCATCGGCGCCTGGTTTGGCTGGCAAATGCTGCCTGCCGTCATCCTGCTT
TCATCACTGGCGGGCTCGGTCATTGGCATAGGCTTGATTCTGTTTGCACGCCATGGTCGCAGCACGCCCATCCCATTTGG
CCCCTACCTGGCATTAGGCGGCATTGCCGCCTTGTTCTTCGGCCCGACTTTGGCAAGCTTTTACCTGGGCAGCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-130)

• Type IV leader peptidase family (Peptidase_A24) (142-250)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	51.203	100	0.512
pilD	Acinetobacter baumannii D1279779	50.859	100	0.509
pilD	Vibrio cholerae strain A1552	53.237	95.533	0.509
pilD	Vibrio campbellii strain DS40M4	51.579	97.938	0.505
pilD	Neisseria gonorrhoeae MS11	50.775	88.66	0.45