Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   F5J09_RS06565 Genome accession   NZ_CP044361
Coordinates   1315134..1316375 (+) Length   413 a.a.
NCBI ID   WP_003602466.1    Uniprot ID   A0A422M4M9
Organism   Lacticaseibacillus paracasei strain TD 062     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1310134..1321375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5J09_RS06535 (F5J09_06790) tsf 1310595..1311476 (+) 882 WP_159301176.1 translation elongation factor Ts -
  F5J09_RS06540 (F5J09_06795) pyrH 1311712..1312431 (+) 720 WP_003602471.1 UMP kinase -
  F5J09_RS06545 (F5J09_06800) frr 1312431..1312988 (+) 558 WP_003565804.1 ribosome recycling factor -
  F5J09_RS06555 (F5J09_06805) - 1313541..1314293 (+) 753 WP_159301177.1 isoprenyl transferase -
  F5J09_RS06560 (F5J09_06810) - 1314329..1315117 (+) 789 WP_003565800.1 phosphatidate cytidylyltransferase -
  F5J09_RS06565 (F5J09_06815) eeP 1315134..1316375 (+) 1242 WP_003602466.1 RIP metalloprotease RseP Regulator
  F5J09_RS06570 (F5J09_06820) - 1316400..1318127 (+) 1728 WP_016385982.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45169.81 Da        Isoelectric Point: 8.6663

>NTDB_id=389725 F5J09_RS06565 WP_003602466.1 1315134..1316375(+) (eeP) [Lacticaseibacillus paracasei strain TD 062]
MTTIIAFIVIFCILVVVHEFGHFYFAKRSGILVREFSIGMGPKLWASHKNNTTYTLRLLPLGGYVRMAGWQDEEDEIKPG
TMLSLILNDQGKVVRINASDKTTLAGGMPVQVSRVDLVKDLVIEGYPNGDETTLQTWQVDHDATIIEEDGTEVQIAPEDV
QFQNAPVWRRLLVNFAGPMNNFLLAILAFMIYGLFFGVQVLNTNQIGTVVPGYPAAEAGLKSNATVQTIDGQKMSSFTDL
SKIVSKNAGKSVTFTVKENGKSKNIVIKPNKEGKIGVEAHIDKSPANAIPFGFSQTWNLAVRTWDVLKSMVTGGFSLNKL
AGPVGIYTMTSQSAKGGIQGLLFFMGYLSLGLGITNLLPIPVLDGGKILLNLIEIIRRKPLKPETEGVVTMIGLGLMVLL
MLAVTINDIMRYF

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=389725 F5J09_RS06565 WP_003602466.1 1315134..1316375(+) (eeP) [Lacticaseibacillus paracasei strain TD 062]
ATGACCACTATCATCGCCTTTATCGTTATCTTCTGCATTCTTGTGGTAGTTCACGAGTTTGGCCATTTTTACTTTGCAAA
ACGCAGCGGCATTCTAGTCCGGGAATTTTCGATCGGTATGGGCCCGAAGCTGTGGGCGTCGCACAAGAACAATACGACCT
ACACGCTGCGGTTGCTACCACTTGGCGGATACGTCCGCATGGCTGGCTGGCAAGATGAGGAGGACGAGATTAAGCCCGGG
ACGATGCTGAGCCTGATTCTTAACGATCAAGGCAAGGTTGTCCGGATCAATGCCAGTGACAAAACGACTTTGGCCGGTGG
GATGCCGGTTCAAGTGAGCCGCGTCGATTTGGTCAAAGATCTGGTGATTGAAGGTTATCCGAACGGGGACGAAACAACCT
TGCAAACTTGGCAGGTTGACCACGATGCGACGATCATTGAAGAAGACGGAACCGAGGTTCAGATCGCGCCAGAAGACGTT
CAGTTTCAAAACGCCCCGGTTTGGCGCCGGTTATTGGTCAACTTCGCCGGTCCGATGAATAACTTCTTACTCGCGATTCT
AGCTTTTATGATTTACGGTCTGTTTTTTGGTGTTCAGGTGCTCAATACCAACCAAATCGGAACAGTTGTGCCAGGTTATC
CAGCCGCAGAAGCTGGTCTTAAGTCCAATGCGACGGTGCAAACGATTGACGGTCAAAAAATGTCATCATTCACGGATCTT
TCAAAGATCGTCAGTAAAAATGCCGGTAAATCAGTGACATTTACCGTGAAGGAAAACGGTAAAAGCAAGAACATCGTGAT
CAAGCCAAATAAAGAAGGCAAGATCGGGGTTGAAGCACACATCGATAAGTCCCCAGCAAACGCCATTCCTTTTGGCTTTT
CTCAAACTTGGAATTTGGCTGTCCGCACTTGGGACGTGCTCAAATCCATGGTGACCGGCGGTTTTTCACTCAATAAACTG
GCTGGCCCGGTTGGTATTTATACCATGACGAGTCAAAGTGCCAAAGGGGGTATTCAAGGCTTGCTATTCTTTATGGGTTA
CTTGAGTCTCGGCTTAGGGATTACCAATTTGTTGCCGATTCCAGTGCTTGATGGTGGTAAAATTCTTTTGAACCTGATCG
AAATTATTCGCCGTAAGCCATTAAAACCGGAAACGGAAGGCGTTGTGACCATGATTGGCTTGGGCCTGATGGTTCTATTA
ATGCTAGCGGTCACAATCAACGATATCATGCGCTACTTTTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(206-257)

Peptidase family M50 (Peptidase_M50)

(6-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A422M4M9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

49.057

100

0.504
  eeP Streptococcus thermophilus LMD-9

48.821

100

0.501

Multiple sequence alignment