Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   NMBH4476_RS06370 Genome accession   NC_017516
Coordinates   1245912..1246589 (-) Length   225 a.a.
NCBI ID   WP_002222553.1    Uniprot ID   Q9JU84
Organism   Neisseria meningitidis H44/76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1240912..1251589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBH4476_RS06355 (NMBH4476_1128) hflX 1242498..1243676 (-) 1179 WP_009347253.1 GTPase HflX -
  NMBH4476_RS06360 (NMBH4476_1129) - 1243681..1244961 (-) 1281 WP_002225276.1 CAP domain-containing protein -
  NMBH4476_RS15630 - 1244963..1245091 (+) 129 WP_009347251.1 hypothetical protein -
  NMBH4476_RS06365 (NMBH4476_1130) - 1245114..1245839 (-) 726 WP_002213448.1 epoxyqueuosine reductase QueH -
  NMBH4476_RS06370 (NMBH4476_1131) ysxA/radC 1245912..1246589 (-) 678 WP_002222553.1 DNA repair protein RadC Machinery gene
  NMBH4476_RS06375 (NMBH4476_1132) gshA 1246712..1248061 (-) 1350 WP_002213445.1 glutamate--cysteine ligase -
  NMBH4476_RS06380 (NMBH4476_1133) leuC 1248321..1249730 (+) 1410 WP_002222555.1 3-isopropylmalate dehydratase large subunit -
  NMBH4476_RS06385 (NMBH4476_1134) - 1249827..1250081 (+) 255 WP_002213442.1 hypothetical protein -
  NMBH4476_RS06390 (NMBH4476_1135) leuD 1250143..1250784 (+) 642 WP_002222556.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24990.83 Da        Isoelectric Point: 5.7262

>NTDB_id=38971 NMBH4476_RS06370 WP_002222553.1 1245912..1246589(-) (ysxA/radC) [Neisseria meningitidis H44/76]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=38971 NMBH4476_RS06370 WP_002222553.1 1245912..1246589(-) (ysxA/radC) [Neisseria meningitidis H44/76]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGACCTAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCTTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTAGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACCGTTGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATTGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCCATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTAACGGCGCAAA
CCGTCCGTTCGTTCAGGCAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JU84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378

Multiple sequence alignment