Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   RBRH_RS11015 Genome accession   NC_014722
Coordinates   2505627..2507141 (+) Length   504 a.a.
NCBI ID   WP_013436351.1    Uniprot ID   -
Organism   Mycetohabitans rhizoxinica HKI 454     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2500627..2512141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBRH_RS10990 (RBRH_02131) - 2501824..2502807 (+) 984 WP_041753862.1 KpsF/GutQ family sugar-phosphate isomerase -
  RBRH_RS10995 (RBRH_02132) - 2502815..2503345 (+) 531 WP_013436347.1 KdsC family phosphatase -
  RBRH_RS11000 (RBRH_02133) lptC 2503349..2503954 (+) 606 WP_013436348.1 LPS export ABC transporter periplasmic protein LptC -
  RBRH_RS11005 (RBRH_02134) lptA 2503982..2504680 (+) 699 WP_013436349.1 lipopolysaccharide transport periplasmic protein LptA -
  RBRH_RS11010 (RBRH_02135) lptB 2504677..2505456 (+) 780 WP_013436350.1 LPS export ABC transporter ATP-binding protein -
  RBRH_RS11015 (RBRH_02136) rpoN/rpoN1 2505627..2507141 (+) 1515 WP_013436351.1 RNA polymerase factor sigma-54 Machinery gene
  RBRH_RS11020 (RBRH_02138) hpf 2507328..2507678 (+) 351 WP_041753863.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  RBRH_RS11025 (RBRH_02140) ptsN 2507935..2508390 (+) 456 WP_013436353.1 PTS IIA-like nitrogen regulatory protein PtsN -
  RBRH_RS11030 (RBRH_02141) hprK 2508488..2509456 (+) 969 WP_041754506.1 HPr(Ser) kinase/phosphatase -
  RBRH_RS11035 (RBRH_02142) rapZ 2509511..2510425 (+) 915 WP_049786488.1 RNase adapter RapZ -
  RBRH_RS11040 (RBRH_02143) - 2510450..2511088 (+) 639 WP_013436356.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 55039.30 Da        Isoelectric Point: 5.0661

>NTDB_id=38971 RBRH_RS11015 WP_013436351.1 2505627..2507141(+) (rpoN/rpoN1) [Mycetohabitans rhizoxinica HKI 454]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVATAIAQNPLLENENDWIASPLRVAADGSLVPSQSSALPTGMAE
APAPVPSGVNGERAQSAEPAAVDEYDGMSSDSGTDTASWNLDDYVRPGGASDDDDMPPLQLHESTVSLREHLSTQLRLTQ
ASPRDRALVTFLIESLDDDGYLSASCDEILADLPAELEVDADELNAALALLHSFDPAGVGARSASECLKLQLLRLEPSAT
RTLALEIVSNYLELLAARDFTRLRKHLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKTSQGWQAELNPE
VVPRLRVNHLYANILRSNRGDPSSGSLRQQLQEARWLIKNIQQRFDTILRVAQAIVERQRSFFAHGEIAMRPLVLREIAD
TLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFV
VARRTVAKYREALKIPAVSMRKSL

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=38971 RBRH_RS11015 WP_013436351.1 2505627..2507141(+) (rpoN/rpoN1) [Mycetohabitans rhizoxinica HKI 454]
ATGAAAGCAAGCCTCCAACTCCGTCTATCACAGCATCTGGCGCTGACTCCGCAATTGCAGCAGTCGATCCGGCTACTGCA
GCTGTCGACGCTCGAATTGCAGCAGGAGGTCGCCACGGCGATCGCACAGAATCCCTTGCTGGAGAACGAGAACGACTGGA
TCGCGAGCCCGTTGCGGGTCGCCGCGGACGGCTCACTGGTGCCGTCGCAAAGCAGCGCGCTGCCCACCGGCATGGCCGAG
GCGCCAGCACCGGTGCCCAGCGGCGTGAACGGCGAGCGCGCGCAAAGCGCGGAGCCGGCCGCCGTCGACGAATACGACGG
CATGAGCAGCGACAGCGGCACCGACACGGCGTCGTGGAACCTAGACGACTATGTGCGCCCCGGTGGCGCCTCCGACGACG
ACGACATGCCGCCGCTGCAGCTGCACGAATCCACGGTCAGCCTGCGCGAGCATTTGAGCACGCAGTTGCGCCTGACCCAG
GCTAGCCCGCGCGACCGCGCGCTGGTCACGTTTTTGATCGAGTCGCTGGACGACGATGGCTACCTGAGCGCAAGTTGCGA
CGAAATCCTCGCCGATTTGCCGGCCGAGCTTGAGGTAGACGCCGATGAGCTGAACGCGGCGCTCGCGCTGCTGCACAGCT
TCGATCCGGCAGGAGTCGGGGCGCGCTCAGCGTCCGAATGCCTGAAGCTGCAATTGTTGCGGCTGGAGCCGAGCGCCACG
CGCACGCTGGCGCTGGAAATCGTGTCGAACTATCTAGAGTTGCTGGCGGCGCGCGACTTCACGCGTCTGCGCAAGCACCT
GAAGGCCAGCGACGACGCGCTGCGCGACGCGCACGCACTGATCCGCTCGCTCGAGCCGTTCCCCGGCGCCGCGTACGGCA
AGGCCGAGGCCGACTACGTGGTGCCGGACATCATCGTGAAGAAAACCTCGCAGGGATGGCAGGCGGAATTGAATCCCGAA
GTCGTGCCGCGGCTGCGGGTCAACCACTTATACGCGAACATCCTGCGCAGCAACCGAGGCGACCCGAGCAGCGGTTCGTT
GCGCCAGCAACTGCAGGAAGCGCGCTGGTTGATCAAGAACATCCAGCAACGTTTCGACACGATTTTGCGCGTCGCACAAG
CGATCGTCGAGCGTCAGCGCAGTTTTTTTGCGCATGGCGAGATCGCGATGCGCCCCTTGGTTTTACGAGAAATTGCTGAT
ACGCTGGGCTTGCATGAGTCGACCGTATCGCGGGTCACGACTGGGAAGTACATGTTGACGCCCTTTGGGACGCTCGAGTT
CAAGTACTTCTTTGGCTCGCATGTATCAACTGACACGGGGGGCGCGGCGTCATCGACCGCGATCCGCGCGCTTATCAAGC
AACTGATAGGAGCCGAAGACCCAAAATCACCTCTTTCAGATAGCCGCATCGCTGAACTGCTGGCCGAACAAGGCTTCGTG
GTCGCACGTCGAACTGTGGCGAAATATCGCGAAGCGCTGAAGATTCCAGCTGTTAGCATGCGTAAGTCGTTATAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(141-331)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(347-502)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.639

100

0.69

Multiple sequence alignment