Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   F6467_RS11755 Genome accession   NZ_CP044349
Coordinates   2436007..2436342 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain LC1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2431007..2441342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6467_RS11735 (F6467_11735) gcvT 2431614..2432714 (-) 1101 WP_032874033.1 glycine cleavage system aminomethyltransferase GcvT -
  F6467_RS11740 (F6467_11740) - 2433137..2434807 (+) 1671 WP_032874031.1 DEAD/DEAH box helicase -
  F6467_RS11745 (F6467_11745) - 2434829..2435623 (+) 795 WP_007612541.1 YqhG family protein -
  F6467_RS11750 (F6467_11750) sinI 2435800..2435973 (+) 174 WP_032874029.1 anti-repressor SinI Regulator
  F6467_RS11755 (F6467_11755) sinR 2436007..2436342 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  F6467_RS11760 (F6467_11760) tasA 2436390..2437175 (-) 786 WP_032874027.1 biofilm matrix protein TasA -
  F6467_RS11765 (F6467_11765) sipW 2437240..2437824 (-) 585 WP_032874025.1 signal peptidase I SipW -
  F6467_RS11770 (F6467_11770) tapA 2437796..2438467 (-) 672 WP_032874023.1 amyloid fiber anchoring/assembly protein TapA -
  F6467_RS11775 (F6467_11775) - 2438726..2439055 (+) 330 WP_032874021.1 DUF3889 domain-containing protein -
  F6467_RS11780 (F6467_11780) - 2439096..2439275 (-) 180 WP_022552966.1 YqzE family protein -
  F6467_RS11785 (F6467_11785) comGG 2439332..2439709 (-) 378 WP_032874019.1 competence type IV pilus minor pilin ComGG Machinery gene
  F6467_RS11790 (F6467_11790) comGF 2439710..2440210 (-) 501 WP_223204419.1 competence type IV pilus minor pilin ComGF -
  F6467_RS11795 (F6467_11795) comGE 2440119..2440433 (-) 315 WP_032874016.1 competence type IV pilus minor pilin ComGE Machinery gene
  F6467_RS11800 (F6467_11800) comGD 2440417..2440854 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  F6467_RS11805 (F6467_11805) comGC 2440844..2441152 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=389568 F6467_RS11755 WP_003153104.1 2436007..2436342(+) (sinR) [Bacillus velezensis strain LC1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=389568 F6467_RS11755 WP_003153104.1 2436007..2436342(+) (sinR) [Bacillus velezensis strain LC1]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment