Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HHM66_RS06930 Genome accession   NZ_CP053074
Coordinates   1409300..1409896 (-) Length   198 a.a.
NCBI ID   WP_003061588.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1404300..1414896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHM66_RS06915 (HHM66_06920) - 1405710..1406405 (-) 696 WP_003057977.1 TIGR02206 family membrane protein -
  HHM66_RS06920 (HHM66_06925) murF 1406509..1407876 (-) 1368 WP_003057973.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  HHM66_RS06925 (HHM66_06930) - 1408082..1409128 (-) 1047 WP_003060500.1 D-alanine--D-alanine ligase -
  HHM66_RS06930 (HHM66_06935) recR 1409300..1409896 (-) 597 WP_003061588.1 recombination mediator RecR Machinery gene
  HHM66_RS06935 (HHM66_06940) pbp2b 1409908..1411962 (-) 2055 WP_014612441.1 penicillin-binding protein PBP2B -
  HHM66_RS06940 (HHM66_06945) - 1412069..1412839 (-) 771 WP_015057868.1 formate/nitrite transporter family protein -
  HHM66_RS06945 (HHM66_06950) - 1412966..1413508 (-) 543 WP_003053939.1 hypothetical protein -
  HHM66_RS06950 (HHM66_06955) - 1413610..1414131 (-) 522 WP_012767268.1 transcription repressor NadR -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21599.74 Da        Isoelectric Point: 4.7577

>NTDB_id=389470 HHM66_RS06930 WP_003061588.1 1409300..1409896(-) (recR) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
MFYPTPIAKLIESYSKLPGIGVKTATRLAFYTIGMSDEAVNDFAKNLLAAKRELTYCSICGNLTDDDPCSICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=389470 HHM66_RS06930 WP_003061588.1 1409300..1409896(-) (recR) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
GTGTTTTACCCAACCCCTATTGCAAAATTAATCGAAAGTTATTCCAAGCTCCCAGGAATTGGGGTAAAAACGGCAACTAG
ACTTGCCTTTTACACAATTGGAATGTCTGACGAGGCTGTCAATGACTTTGCTAAAAATTTATTGGCAGCTAAAAGAGAAT
TAACCTATTGTTCCATTTGTGGCAACCTGACAGATGATGATCCTTGTTCTATCTGCACAGATACAAGTCGTGACCAGACA
ACGATTCTTGTGGTGGAAGATGCTAAAGATGTTTCTGCTATGGAAAAAATTCAAGAGTATCATGGTTATTACCATGTGCT
GCATGGTTTAATTTCACCGATGAATGGTGTTGGTCCGGATGATATCAATCTAAAAAGTTTAATTACCCGTTTAATGGACG
GTAAAGTGACTGAAGTTATCGTAGCGACCAATGCCACAGCTGATGGCGAAGCAACATCTATGTATATCTCACGGGTCTTG
AAACCAGCAGGAATCAAAGTTACCCGCTTAGCAAGAGGGCTCGCAGTGGGGTCAGATATTGAATACGCAGATGAAGTCAC
CTTGTTAAGAGCTATTGAAAACCGCACAGAACTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495

Multiple sequence alignment