Detailed information NTG0389326

Bioinformatically predicted

Overview

• Name: sxy/tfoX
• Type: Regulator
• Locus tag: F7D05_RS07515
• Genome accession: NZ_CP044312
• Coordinates: 1587247..1587876 (+)
• Length: 209 a.a.
• NCBI ID: WP_000839153.1
• Uniprot ID: A0A9Q6Y251
• Organism: Escherichia coli strain RM13745
• Function: positive regulator of competence gene (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	1587447..1601767	1587247..1587876	flank	-429

Gene organization within MGE regions

Location: 1587247..1601767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F7D05_RS07515 (F7D05_07645)	sxy/tfoX	1587247..1587876 (+)	630	WP_000839153.1	CRP-S regulon transcriptional coactivator Sxy	Regulator
F7D05_RS07520 (F7D05_07650)	yccS	1587839..1590001 (-)	2163	WP_072095558.1	YccS family putative transporter	-
F7D05_RS07525 (F7D05_07655)	yccF	1590011..1590457 (-)	447	WP_001261235.1	YccF domain-containing protein	-
F7D05_RS07530 (F7D05_07660)	helD	1590580..1592634 (+)	2055	WP_000420537.1	DNA helicase IV	-
F7D05_RS07535 (F7D05_07665)	mgsA	1592666..1593124 (-)	459	WP_000424181.1	methylglyoxal synthase	-
F7D05_RS07540 (F7D05_07670)	yccT	1593220..1593882 (-)	663	WP_000847791.1	DUF2057 family protein	-
F7D05_RS07545 (F7D05_07675)	yccU	1594055..1594468 (+)	414	WP_000665217.1	CoA-binding protein	-
F7D05_RS07550 (F7D05_07680)	hspQ	1594513..1594830 (-)	318	WP_001295356.1	heat shock protein HspQ	-
F7D05_RS07555 (F7D05_07685)	rlmI	1594888..1596078 (-)	1191	WP_000116288.1	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	-
F7D05_RS07560 (F7D05_07690)	yccX	1596173..1596451 (+)	279	WP_000048252.1	acylphosphatase	-
F7D05_RS07565 (F7D05_07695)	tusE	1596448..1596777 (-)	330	WP_000904442.1	sulfurtransferase TusE	-
F7D05_RS07570 (F7D05_07700)	yccA	1596868..1597527 (-)	660	WP_000375136.1	FtsH protease modulator YccA	-
F7D05_RS07575 (F7D05_07705)	-	1597935..1598954 (-)	1020	WP_072095559.1	tyrosine-type recombinase/integrase	-
F7D05_RS07580 (F7D05_07710)	-	1598923..1599174 (-)	252	WP_000273158.1	DUF4224 domain-containing protein	-
F7D05_RS27110 (F7D05_07715)	-	1599241..1600992 (-)	1752	WP_346266979.1	3'-5' exoribonuclease	-
F7D05_RS26735	-	1601200..1601706 (-)	507	Protein_1497	RecE family exodeoxyribonuclease	-

Sequence

Protein

• Length: 209 a.a.
• Molecular weight: 24147.02 Da
• Isoelectric Point: 9.2180

>NTDB_id=389326 F7D05_RS07515 WP_000839153.1 1587247..1587876(+) (sxy/tfoX) [Escherichia coli strain RM13745]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide

• Length: 630 bp

>NTDB_id=389326 F7D05_RS07515 WP_000839153.1 1587247..1587876(+) (sxy/tfoX) [Escherichia coli strain RM13745]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

• TfoX N-terminal domain (TfoX_N) (14-106)

• TfoX C-terminal domain (TfoX_C) (116-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sxy/tfoX	Escherichia coli BW25113 strain K-12	100	100	1