Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   F6X58_RS02950 Genome accession   NZ_CP044262
Coordinates   519928..521721 (-) Length   597 a.a.
NCBI ID   WP_139454107.1    Uniprot ID   -
Organism   Campylobacter armoricus strain CA639     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514928..526721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6X58_RS02925 dnaJ 515182..516303 (-) 1122 WP_139426698.1 molecular chaperone DnaJ -
  F6X58_RS02930 - 516425..517096 (+) 672 WP_039617824.1 response regulator transcription factor -
  F6X58_RS02935 - 517093..518325 (+) 1233 WP_139454106.1 ArsS family sensor histidine kinase -
  F6X58_RS02940 recR 518326..518901 (+) 576 WP_236103558.1 recombination mediator RecR -
  F6X58_RS02945 - 518888..519931 (-) 1044 WP_139426704.1 hypothetical protein -
  F6X58_RS02950 uvrC 519928..521721 (-) 1794 WP_139454107.1 excinuclease ABC subunit UvrC Machinery gene
  F6X58_RS02955 - 521702..522172 (-) 471 WP_167507488.1 hypothetical protein -
  F6X58_RS02960 nhaD 522307..523662 (+) 1356 WP_139453103.1 sodium:proton antiporter NhaD -
  F6X58_RS02965 guaA 523672..525207 (+) 1536 WP_139454108.1 glutamine-hydrolyzing GMP synthase -
  F6X58_RS02970 - 525208..525759 (-) 552 WP_139454109.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 69913.01 Da        Isoelectric Point: 9.5244

>NTDB_id=389149 F6X58_RS02950 WP_139454107.1 519928..521721(-) (uvrC) [Campylobacter armoricus strain CA639]
MLEAELKTLPNSSGVYQYFDIHGKLLYVGKAKNLKNRIKSYFNFTPKLCPNPNNSLRIQKMISETHHLEFITTNSEADAL
ILENSFIKQLHPKYNILLRDDKTYPYIYLDLNEEFPRFEITRKIIKKSKIKYFGPFFKGAKELINALCLTFPIRQKKTCK
ELCLFYQIKRCKGPCEKKISKQDYEEIIQKATYALLNPLSLVKNLENKMLEYAKNENYEEAAQTRDQIKTIQDLSIKIQI
DLAKLEDFDVFAIYCEENILSMVRFVINNGKIISSNHKILVLKNQNEFDKNAIYKQYILENFTKETPLNSNHIYIYEDFE
DMELLQDLLSERFSKKFYIKTPKLGEKKDLCNLALENAKINIQKHLKNEYYLILKEIKEYFKLQNYPNHIEIFDNSHIQG
IANVGAFVVFKDGNFDKNSYRHYHLTHKNDYEQMLEILTKRALSFDKNPPPDLWVIDGGSTLLKLANDIIKSSGANVDIL
AISKEKIDAKAYRAKGSAKDKLYTLEGKIQLLPEDKKLQFIQKLRDEAHRFAINFHQNTKRKQDLQSSKLIQLGISQAYI
KKFLDYYGSFDKIFKADFEELKLLSNVKTAKLIKGNL

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=389149 F6X58_RS02950 WP_139454107.1 519928..521721(-) (uvrC) [Campylobacter armoricus strain CA639]
ATGCTAGAAGCCGAACTTAAAACACTACCAAATTCATCGGGTGTCTATCAATATTTTGATATTCACGGAAAACTTTTATA
TGTTGGCAAGGCAAAAAATTTAAAAAATAGAATCAAGAGTTATTTCAATTTTACTCCAAAACTTTGCCCTAATCCAAACA
ATAGCTTAAGAATTCAAAAAATGATTAGTGAGACTCATCATTTAGAATTTATTACAACAAACAGCGAAGCTGATGCACTA
ATCTTAGAAAATTCTTTCATAAAACAACTCCATCCAAAATATAATATATTGTTAAGAGATGATAAAACATATCCTTATAT
TTATTTAGATTTAAATGAAGAATTTCCAAGATTTGAAATCACAAGAAAAATTATAAAAAAAAGTAAAATAAAATATTTTG
GACCTTTTTTTAAAGGAGCAAAAGAGCTAATAAATGCTCTATGCCTAACTTTTCCAATAAGGCAAAAGAAAACATGTAAA
GAACTTTGCTTGTTTTACCAAATAAAACGCTGCAAGGGTCCTTGTGAGAAAAAAATTTCTAAGCAAGATTATGAAGAAAT
CATACAAAAAGCAACATACGCTCTTTTAAATCCTTTGTCTTTGGTGAAAAATTTAGAAAATAAAATGCTTGAATATGCTA
AAAACGAAAATTACGAAGAAGCAGCTCAAACTAGAGATCAGATTAAAACAATTCAAGATTTAAGCATTAAAATCCAAATT
GATCTTGCTAAATTAGAAGATTTTGATGTTTTTGCAATATATTGTGAAGAAAATATACTTTCCATGGTTCGTTTTGTTAT
AAATAATGGAAAAATAATTAGTTCAAATCATAAAATTTTAGTATTAAAAAATCAAAATGAATTTGATAAAAATGCAATTT
ACAAACAATACATTTTAGAAAATTTTACCAAAGAAACACCATTAAATTCAAATCATATTTATATATATGAAGACTTTGAA
GATATGGAACTTTTACAAGATTTACTTAGTGAACGATTTTCTAAAAAATTTTATATCAAAACACCAAAATTAGGAGAAAA
AAAGGATTTATGTAACCTAGCTTTAGAAAATGCAAAAATCAATATACAAAAACATTTAAAAAATGAATACTATTTAATTT
TAAAAGAAATTAAAGAGTATTTTAAACTGCAAAATTATCCTAACCATATAGAAATTTTTGATAATTCTCATATACAAGGA
ATTGCAAATGTTGGTGCTTTTGTGGTGTTTAAAGATGGAAATTTTGATAAAAATTCTTATAGACATTACCATTTAACACA
TAAAAATGACTATGAACAAATGCTTGAAATTCTTACTAAAAGAGCTTTATCTTTTGATAAAAATCCACCACCTGATTTAT
GGGTGATTGATGGTGGTAGCACCTTGCTAAAACTGGCAAATGATATTATAAAAAGCTCTGGTGCAAATGTAGATATATTA
GCTATATCTAAAGAAAAAATAGATGCAAAAGCTTATAGAGCAAAAGGAAGCGCAAAAGATAAGCTTTATACATTAGAAGG
TAAAATCCAACTTTTGCCTGAAGATAAGAAGTTACAATTTATACAAAAATTACGCGATGAAGCGCATCGTTTTGCTATTA
ATTTTCATCAAAATACAAAAAGAAAGCAAGATTTACAAAGCTCGAAGTTAATACAACTTGGAATTTCTCAAGCTTATATT
AAAAAATTTCTAGATTATTATGGTAGTTTTGATAAAATTTTCAAGGCTGATTTTGAAGAATTAAAATTACTTTCAAATGT
AAAAACTGCAAAATTAATTAAGGGAAATTTATGA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(378-533)

GIY-YIG catalytic domain (GIY-YIG)

(13-95)

UvrB/uvrC motif (UVR)

(201-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

49.659

98.157

0.487

Multiple sequence alignment