Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LPB220_RS08825 Genome accession   NZ_CP044230
Coordinates   1706616..1708418 (-) Length   600 a.a.
NCBI ID   WP_150906480.1    Uniprot ID   A0A5J6LNK5
Organism   Streptococcus sp. LPB0220     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1701616..1713418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB220_RS08805 (LPB220_08810) queG 1702210..1703349 (+) 1140 WP_070595412.1 tRNA epoxyqueuosine(34) reductase QueG -
  LPB220_RS08810 (LPB220_08815) - 1703372..1703998 (-) 627 WP_003008580.1 GNAT family N-acetyltransferase -
  LPB220_RS08815 (LPB220_08820) - 1704082..1704597 (-) 516 WP_024054809.1 phosphatase PAP2 family protein -
  LPB220_RS08820 (LPB220_08825) rcrQ 1704863..1706623 (-) 1761 WP_150906479.1 ABC transporter ATP-binding protein Regulator
  LPB220_RS08825 (LPB220_08830) rcrP 1706616..1708418 (-) 1803 WP_150906480.1 ABC transporter ATP-binding protein Regulator
  LPB220_RS08830 (LPB220_08835) - 1708415..1708861 (-) 447 WP_150906845.1 MarR family winged helix-turn-helix transcriptional regulator -
  LPB220_RS08835 (LPB220_08840) - 1708997..1709407 (-) 411 WP_049507051.1 peptide deformylase -
  LPB220_RS08845 (LPB220_08850) scrK 1709655..1710554 (-) 900 WP_003016958.1 fructokinase ScrK -
  LPB220_RS08850 (LPB220_08855) - 1710714..1712633 (-) 1920 WP_150906482.1 sucrose-specific PTS transporter subunit IIBC -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 66301.24 Da        Isoelectric Point: 9.4492

>NTDB_id=389008 LPB220_RS08825 WP_150906480.1 1706616..1708418(-) (rcrP) [Streptococcus sp. LPB0220]
MINIFRRLTAKEWGMIALSTVFICLAVWMDLKTPEYLSDITTLLAKEGTKVSDIMDPGSKMLLFSFGSFLMAVFVGFLAS
RVAASFTTRLRGEIFHQVMDYSDAEIKKFSVPSLLTRTTNDLTQLQIMIVMGMQVVTRGPIMAIWALTKIWGKSSAWTTS
VGIAVLMVLILLSVLVLIAFPRQQKVQGLTDALNATTRESLTGVRVVRAYNAEAYQNEKFQAENKGLTRLNLFVYRLMSL
MNPVMTVVSSGLTLAIYWIGAHLINDIAMPKDPTKILASPALADRTKVFSDMITFSSYAMQVVIGFMMMVAILIILPRAL
VSAKRINQVLALEPSVAFPSESKETTGQVGTVEFQDVSFRYGRTSRAVIEHVTFSAQKGQTVAFIGSTGSGKSTLVNLIP
RFYDATEGKILVDGVNVKDYSHQELNNKVGYIPQKAVLFSGTIRSNMEFGESSQGKLEDEAIWKALELAQAKEFVAAKEK
GLDTEVAQGGSNFSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILRQALKEKLADTTKLIVAQRISTIMDADLI
LVLDQGKVVGQGTHKELLATNEVYQEIAYSQLSKEELEHA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=389008 LPB220_RS08825 WP_150906480.1 1706616..1708418(-) (rcrP) [Streptococcus sp. LPB0220]
ATGATCAATATATTTCGGCGCTTAACCGCCAAAGAATGGGGCATGATTGCCCTTAGTACGGTCTTTATCTGTCTAGCGGT
TTGGATGGATTTAAAGACTCCTGAATACTTATCTGATATCACGACCCTCTTAGCTAAGGAGGGGACCAAGGTTTCGGATA
TTATGGATCCGGGAAGCAAGATGTTGCTCTTCTCTTTTGGAAGCTTTTTAATGGCAGTTTTTGTAGGCTTTTTGGCTTCA
AGAGTCGCTGCCAGCTTTACGACGCGACTTCGAGGAGAGATTTTCCATCAAGTGATGGATTACTCTGATGCCGAGATCAA
GAAATTCTCCGTTCCCTCTCTCTTGACCCGGACGACCAACGATTTGACCCAGTTGCAAATCATGATTGTGATGGGGATGC
AAGTTGTGACGCGTGGTCCCATTATGGCGATTTGGGCCTTAACCAAGATTTGGGGGAAGAGCAGTGCCTGGACAACTTCT
GTTGGGATTGCGGTCTTGATGGTCTTGATTCTTCTCTCTGTTCTGGTTCTTATTGCCTTTCCGCGCCAGCAAAAGGTTCA
AGGTTTGACCGATGCTTTGAATGCGACGACACGGGAGAGTTTGACTGGGGTGCGAGTGGTTCGCGCCTACAATGCGGAAG
CGTATCAAAATGAGAAATTCCAGGCTGAAAACAAGGGCTTAACCCGTCTAAATCTCTTTGTTTATCGGTTGATGTCTTTG
ATGAACCCGGTCATGACAGTGGTATCAAGTGGGTTGACCCTGGCTATCTACTGGATTGGGGCGCACTTGATCAATGATAT
CGCCATGCCAAAAGATCCTACAAAGATCCTCGCCAGTCCTGCATTAGCGGATCGGACCAAGGTCTTCTCAGATATGATCA
CCTTCTCCTCTTACGCCATGCAGGTTGTCATTGGCTTTATGATGATGGTGGCCATCTTGATTATCCTTCCTCGTGCCTTG
GTATCCGCAAAACGGATTAATCAGGTCTTGGCTCTTGAACCGTCTGTAGCCTTCCCAAGTGAGTCAAAAGAAACAACAGG
CCAAGTAGGTACAGTAGAATTTCAAGACGTTTCCTTCCGATATGGACGGACTTCCCGTGCTGTGATTGAGCACGTGACCT
TCTCAGCTCAGAAAGGACAAACCGTTGCCTTCATCGGATCAACTGGTTCTGGTAAATCCACTTTGGTCAATTTAATCCCG
CGTTTTTACGATGCGACAGAAGGAAAGATCTTAGTGGATGGGGTGAATGTCAAGGACTATAGCCACCAAGAATTGAACAA
TAAAGTCGGCTACATTCCACAAAAAGCAGTGCTCTTTAGTGGCACGATTCGCTCCAATATGGAATTTGGGGAAAGTAGCC
AAGGAAAATTAGAGGATGAAGCCATCTGGAAAGCTCTTGAATTGGCCCAAGCCAAAGAGTTTGTTGCCGCAAAAGAGAAG
GGCTTGGATACAGAAGTAGCGCAAGGAGGAAGCAACTTCTCTGGAGGACAACGTCAACGTTTGGCGATTGCGCGTGCCCT
TGCACGCAAGCCCGAGATCCTCATCTTTGATGATTCCTTCTCAGCCCTGGATTATAAAACAGATCGGATCTTGCGACAAG
CCCTAAAAGAAAAGTTGGCAGATACGACCAAATTGATCGTTGCGCAACGGATTTCGACCATTATGGATGCGGATTTGATT
TTGGTCTTGGATCAAGGGAAGGTCGTCGGTCAAGGTACCCACAAGGAATTGCTTGCGACCAATGAAGTCTATCAAGAAAT
TGCCTATTCACAATTGTCTAAGGAGGAGTTGGAACATGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(370-519)

ABC transporter transmembrane region (ABC_membrane)

(18-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6LNK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

78.667

100

0.787

Multiple sequence alignment