Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LPB220_RS08820 Genome accession   NZ_CP044230
Coordinates   1704863..1706623 (-) Length   586 a.a.
NCBI ID   WP_150906479.1    Uniprot ID   A0A5J6LNX9
Organism   Streptococcus sp. LPB0220     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1699863..1711623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB220_RS08795 (LPB220_08800) - 1700127..1700867 (-) 741 WP_070466482.1 MerR family transcriptional regulator -
  LPB220_RS08800 (LPB220_08805) manA 1701150..1702094 (-) 945 WP_150906477.1 mannose-6-phosphate isomerase, class I -
  LPB220_RS08805 (LPB220_08810) queG 1702210..1703349 (+) 1140 WP_070595412.1 tRNA epoxyqueuosine(34) reductase QueG -
  LPB220_RS08810 (LPB220_08815) - 1703372..1703998 (-) 627 WP_003008580.1 GNAT family N-acetyltransferase -
  LPB220_RS08815 (LPB220_08820) - 1704082..1704597 (-) 516 WP_024054809.1 phosphatase PAP2 family protein -
  LPB220_RS08820 (LPB220_08825) rcrQ 1704863..1706623 (-) 1761 WP_150906479.1 ABC transporter ATP-binding protein Regulator
  LPB220_RS08825 (LPB220_08830) rcrP 1706616..1708418 (-) 1803 WP_150906480.1 ABC transporter ATP-binding protein Regulator
  LPB220_RS08830 (LPB220_08835) - 1708415..1708861 (-) 447 WP_150906845.1 MarR family winged helix-turn-helix transcriptional regulator -
  LPB220_RS08835 (LPB220_08840) - 1708997..1709407 (-) 411 WP_049507051.1 peptide deformylase -
  LPB220_RS08845 (LPB220_08850) scrK 1709655..1710554 (-) 900 WP_003016958.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65330.01 Da        Isoelectric Point: 5.3230

>NTDB_id=389007 LPB220_RS08820 WP_150906479.1 1704863..1706623(-) (rcrQ) [Streptococcus sp. LPB0220]
MHKTKQESSLWRQLSPYLKGFHLFFLVAILFSVVSSIITVIGPDKLKEITDTITKGMGGAIDIDKITSIALTLAILYGVG
ALVSYSSSFIISTMIQRFAERLRNAIAEKINRVPLQYFDSHEQGDTLSRVTNDVDLMTQSFNQSLVQMVSSIVLLIGSIF
MMFKTDWHLAVTAIVSVFAGFALSSIIMVKSQPLFKQQQDNLAKVSGYVEEIYSGHNIVISYNGRHQAKNHFDAINQDLY
HSMWKSQFFSGIMMPLMQFVGNFGYVMVCIVGAVLTINGDITIGTIVAFMTYVRIFTQPIGQMAQGITQLQSASAAMGRV
FEFLDEEEMEDESQKTRQLETPEGHVTFEHVRFGYSSDKTIIHDFTAEAKPGQKVAIVGPTGAGKTTMVNLLMRFYDIQA
GKITIDGVDTKAMSREEVHDAFSMVLQDTWLFEGTIRENLVFNQTDISDEAVEAATRAVGVHHFIRTLPNGYDTVLDDSV
TLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQ
GNHQELMSQNGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=389007 LPB220_RS08820 WP_150906479.1 1704863..1706623(-) (rcrQ) [Streptococcus sp. LPB0220]
ATGCATAAAACAAAACAAGAATCGTCCCTTTGGAGACAACTTTCTCCCTATTTGAAGGGCTTCCACCTATTTTTCCTAGT
TGCTATCCTCTTTTCGGTCGTATCGAGTATTATCACGGTTATTGGACCGGATAAGTTAAAAGAAATTACAGATACCATTA
CAAAAGGGATGGGAGGCGCCATTGATATTGATAAGATCACTTCGATTGCCCTGACCTTAGCCATCCTTTATGGAGTTGGA
GCACTGGTGTCCTACAGCAGTAGTTTCATTATCTCAACGATGATTCAGCGCTTTGCAGAACGCTTGCGCAATGCTATTGC
TGAGAAGATCAATCGCGTGCCCCTCCAATATTTTGATAGCCATGAACAAGGAGATACCTTGTCTCGTGTGACCAATGACG
TGGATTTGATGACCCAATCCTTTAACCAAAGCTTGGTTCAAATGGTCTCTTCTATTGTCTTATTGATTGGCTCCATCTTT
ATGATGTTTAAGACGGACTGGCACTTGGCGGTGACAGCGATTGTGTCCGTCTTTGCAGGTTTTGCTCTTTCCAGCATTAT
TATGGTCAAGAGCCAGCCTCTCTTTAAGCAACAACAGGACAACCTTGCCAAAGTTTCAGGTTATGTTGAAGAAATCTATA
GTGGCCACAATATCGTCATTTCCTACAATGGCCGTCACCAAGCCAAAAATCATTTTGATGCCATCAACCAAGATTTGTAC
CATAGCATGTGGAAATCCCAATTCTTCTCTGGGATCATGATGCCCTTGATGCAGTTTGTAGGGAATTTCGGCTATGTCAT
GGTCTGTATCGTTGGGGCTGTCCTCACCATTAATGGAGACATTACCATCGGGACCATTGTGGCCTTTATGACCTATGTCC
GCATCTTTACCCAACCAATCGGTCAAATGGCGCAAGGAATTACCCAATTGCAATCAGCCAGTGCTGCTATGGGGCGTGTC
TTTGAATTCTTAGACGAAGAAGAAATGGAAGACGAATCCCAAAAAACACGTCAATTGGAAACACCCGAAGGTCATGTTAC
CTTTGAACATGTGCGTTTTGGCTATTCATCAGATAAGACTATTATCCATGACTTTACAGCTGAAGCGAAGCCAGGACAGA
AGGTGGCTATTGTTGGTCCAACAGGTGCTGGTAAGACCACCATGGTCAATCTCTTGATGCGTTTTTACGACATTCAAGCT
GGTAAAATTACCATCGATGGTGTGGATACTAAGGCCATGAGCCGAGAAGAAGTTCATGATGCCTTTTCGATGGTCTTGCA
AGATACCTGGCTCTTTGAAGGCACTATTCGAGAAAACCTGGTCTTCAATCAAACCGATATTTCAGATGAAGCGGTCGAAG
CGGCAACCCGAGCTGTTGGGGTCCATCACTTTATTCGGACCTTGCCGAATGGCTATGATACTGTATTAGATGATTCAGTG
ACCTTGTCCGTTGGTCAAAAGCAACTCTTGACCATTGCGCGTGCCCTCTTGAAGGATGCTCCGCTCCTCATCTTGGATGA
AGCAACCTCATCTGTCGATACCCGTACAGAAGAGTTGATTCAAAAAGCCATGGACAAACTCATGGAAGGCCGAACTTCCT
TTGTCATTGCCCATCGCTTGTCCACTATCCGTAATGCGGATCTGATTCTCGTGATGAAAGATGGAAATATTATCGAGCAA
GGCAACCACCAAGAACTCATGAGCCAAAATGGCTTCTATGCTGATCTCTATAATAGCCAATTCACAGAAGAAGTAGCATG
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(26-299)

ABC transporter (ABC_tran)

(364-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6LNX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

76.936

99.147

0.763

Multiple sequence alignment