Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LPB220_RS07880 Genome accession   NZ_CP044230
Coordinates   1518065..1518874 (-) Length   269 a.a.
NCBI ID   WP_150906394.1    Uniprot ID   A0A5J6LMQ5
Organism   Streptococcus sp. LPB0220     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1513065..1523874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB220_RS07860 (LPB220_07865) rnc 1515183..1515884 (-) 702 WP_031573937.1 ribonuclease III -
  LPB220_RS10810 - 1516217..1516678 (+) 462 WP_024054733.1 hypothetical protein -
  LPB220_RS07870 (LPB220_07875) - 1516941..1517327 (-) 387 WP_150906393.1 YbaN family protein -
  LPB220_RS07875 (LPB220_07880) - 1517361..1517906 (-) 546 WP_049497366.1 hypothetical protein -
  LPB220_RS07880 (LPB220_07885) vicX 1518065..1518874 (-) 810 WP_150906394.1 MBL fold metallo-hydrolase Regulator
  LPB220_RS07885 (LPB220_07890) micB 1518882..1520234 (-) 1353 WP_061591303.1 cell wall metabolism sensor histidine kinase VicK Regulator
  LPB220_RS07890 (LPB220_07895) micA 1520227..1520928 (-) 702 WP_003008151.1 response regulator YycF Regulator
  LPB220_RS07895 (LPB220_07900) - 1521433..1522482 (+) 1050 WP_150906395.1 DUF389 domain-containing protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29725.72 Da        Isoelectric Point: 5.7570

>NTDB_id=389000 LPB220_RS07880 WP_150906394.1 1518065..1518874(-) (vicX) [Streptococcus sp. LPB0220]
MTEEGFKYSILASGSSGNSFYLETPKKKLLIDAGLSGKKITGLLAEIDRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEATWKAMEGTKYLGKVDDAQKHIFEMGKTMTFGDIDIESFGVSHDAAAPQFYRLMKDGKSFVMLTDTGYVSDRLAG
IVADADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGADAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMEN
QLARADLAVGHDFEVLDTSPDTATPLTKI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=389000 LPB220_RS07880 WP_150906394.1 1518065..1518874(-) (vicX) [Streptococcus sp. LPB0220]
ATGACAGAAGAGGGATTTAAGTACAGTATTTTAGCTTCAGGTTCTAGTGGAAATTCTTTCTACCTTGAGACACCAAAGAA
AAAACTGCTCATTGATGCAGGTCTCTCAGGGAAAAAGATTACGGGACTATTGGCTGAAATTGATCGCAAACCAGAAGATT
TAGATGCCATTCTGATTACGCACGAACACTCAGACCATATCCATGGTGTGGGTGTTTTAGCGAGGAAATATGGTATGGAT
CTATATGCTAATGAAGCCACTTGGAAGGCTATGGAAGGGACCAAGTATCTAGGAAAGGTCGATGATGCTCAAAAGCATAT
CTTTGAAATGGGCAAGACCATGACTTTCGGAGATATTGATATTGAGAGCTTTGGCGTTAGTCACGATGCTGCAGCCCCTC
AATTTTATCGCTTGATGAAGGATGGGAAGAGCTTTGTCATGCTGACGGATACGGGCTATGTGAGCGATCGCTTGGCAGGT
ATTGTCGCGGATGCGGATGGCTATCTGATTGAGTCCAACCATGATGTAGAGATCCTTCGAGCAGGTTCGTATGCTTGGCG
CTTGAAGCAGCGGATCTTGTCTGATTTAGGCCACCTTTCTAACGAAGACGGTGCGGATGCCATGATCCGAACCTTGGGGA
ATCGCACCAAGAAGATTTATTTGGGACATTTGTCAAAAGAGAACAATATCAAAGAATTGGCCCATATGACCATGGAGAAT
CAACTGGCCAGAGCAGATCTAGCAGTCGGTCATGATTTTGAGGTGCTGGATACCTCACCAGACACCGCGACTCCTTTGAC
GAAGATATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

78.439

100

0.784

Multiple sequence alignment