Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F5976_RS07615 Genome accession   NZ_CP044228
Coordinates   1456641..1457237 (-) Length   198 a.a.
NCBI ID   WP_005685676.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus strain hsryfm 1301     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1451641..1462237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5976_RS07580 (F5976_07580) - 1452343..1452537 (-) 195 WP_005685667.1 hypothetical protein -
  F5976_RS07585 (F5976_07585) cydB 1452577..1453596 (-) 1020 WP_150861243.1 cytochrome d ubiquinol oxidase subunit II -
  F5976_RS07590 (F5976_07590) - 1453589..1455067 (-) 1479 WP_049173191.1 cytochrome ubiquinol oxidase subunit I -
  F5976_RS07595 (F5976_07595) - 1455413..1455919 (+) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  F5976_RS07610 (F5976_07610) rpsR 1456314..1456550 (-) 237 WP_003568467.1 30S ribosomal protein S18 -
  F5976_RS07615 (F5976_07615) ssb 1456641..1457237 (-) 597 WP_005685676.1 single-stranded DNA-binding protein Machinery gene
  F5976_RS07620 (F5976_07620) rpsF 1457267..1457563 (-) 297 WP_005685677.1 30S ribosomal protein S6 -
  F5976_RS07625 (F5976_07625) ssb 1457690..1458121 (-) 432 WP_005685678.1 single-stranded DNA-binding protein -
  F5976_RS07630 (F5976_07630) - 1458231..1458317 (+) 87 Protein_1375 deoxyribose-phosphate aldolase -
  F5976_RS15985 - 1458445..1458933 (-) 489 WP_005685680.1 PedC/BrcD family bacteriocin maturation disulfide isomerase -
  F5976_RS07640 (F5976_07640) - 1459051..1459281 (-) 231 WP_005685681.1 hypothetical protein -
  F5976_RS07650 (F5976_07650) - 1459656..1459754 (-) 99 Protein_1378 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21161.89 Da        Isoelectric Point: 4.9056

>NTDB_id=388934 F5976_RS07615 WP_005685676.1 1456641..1457237(-) (ssb) [Lacticaseibacillus rhamnosus strain hsryfm 1301]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSTAPSSNPGQ
NQNPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=388934 F5976_RS07615 WP_005685676.1 1456641..1457237(-) (ssb) [Lacticaseibacillus rhamnosus strain hsryfm 1301]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGAGAAACCGACTTCATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAAGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTACTGGAATCACGGGC
AACCACCCAACAGCGGCCATCTGAACCCGCTAATCCAGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GTAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTACTGCACCATCATCGAATCCGGGACAA
AATCAAAACCCGGCAGCAGGTCAGAACCAAGGTAACAATGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAA
ACCGATCGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.111

100

0.611
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.746

100

0.515

Multiple sequence alignment