Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   F5989_RS05105 Genome accession   NZ_CP044221
Coordinates   1044782..1045684 (-) Length   300 a.a.
NCBI ID   WP_002263524.1    Uniprot ID   A0AAX1K0S8
Organism   Streptococcus mutans strain NCH105     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1039782..1050684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5989_RS05085 (F5989_05165) - 1039866..1040318 (-) 453 WP_002282263.1 PTS sugar transporter subunit IIA -
  F5989_RS05090 (F5989_05170) - 1040335..1040757 (-) 423 WP_002266695.1 PTS sugar transporter subunit IIA -
  F5989_RS05095 (F5989_05175) - 1040747..1042222 (-) 1476 WP_002273282.1 BglG family transcription antiterminator -
  F5989_RS05100 (F5989_05180) - 1042761..1044425 (-) 1665 WP_002289832.1 BglG family transcription antiterminator -
  F5989_RS05105 (F5989_05185) comB/nlmE 1044782..1045684 (-) 903 WP_002263524.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  F5989_RS05110 (F5989_05190) comA/nlmT 1045698..1047980 (-) 2283 WP_002274031.1 peptide cleavage/export ABC transporter Regulator
  F5989_RS05115 (F5989_05195) - 1048409..1048585 (-) 177 WP_019319593.1 hypothetical protein -
  F5989_RS05120 (F5989_05200) - 1048634..1049041 (-) 408 WP_002263726.1 hypothetical protein -
  F5989_RS05125 (F5989_05205) - 1049066..1049284 (-) 219 WP_002278706.1 Blp family class II bacteriocin -
  F5989_RS05130 (F5989_05215) - 1050364..1050642 (-) 279 WP_002264456.1 hypothetical protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34116.49 Da        Isoelectric Point: 10.4213

>NTDB_id=388834 F5989_RS05105 WP_002263524.1 1044782..1045684(-) (comB/nlmE) [Streptococcus mutans strain NCH105]
MDPKFLQSAEFYRRRYHNFATLLIVPLVCLIIFLVIFLCFAKKEITVISTGEVAPTKVVDVIQSYSDSSIIKNNLDNNAA
VEKGDVLIEYSENASPNRQTEQKNIIKERQKREEKEKKKHQKSKKKKKSKSKKASKDKKKKSKDKESSSDDENETKKVSI
FASEDGIIHTNPKYDGANIIPKQTEIAQIYPDIQKTRKVLITYYASSDDVVSMKKGQTARLSLEKKGNDKVVIEGKINNV
ASSATTTKKGNLFKVTAKVKVSKKNSKLIKYGMTGKTVTVIDKKTYFDYFKDKLLHKMDN

Nucleotide


Download         Length: 903 bp        

>NTDB_id=388834 F5989_RS05105 WP_002263524.1 1044782..1045684(-) (comB/nlmE) [Streptococcus mutans strain NCH105]
ATGGATCCTAAATTTTTACAAAGTGCAGAATTTTATAGGAGACGCTATCATAATTTTGCGACACTATTAATTGTTCCTTT
GGTCTGCTTGATTATCTTCTTGGTCATATTCCTTTGTTTTGCTAAAAAAGAAATTACAGTGATTTCTACTGGTGAAGTTG
CACCAACAAAGGTTGTAGATGTTATCCAATCTTACAGTGACAGTTCAATCATTAAAAATAATTTAGATAATAATGCAGCT
GTTGAGAAGGGAGACGTTTTAATTGAATATTCAGAAAATGCCAGTCCAAACCGTCAGACTGAACAAAAGAATATTATAAA
AGAAAGACAAAAACGAGAAGAGAAGGAAAAGAAAAAACACCAAAAGAGCAAGAAAAAGAAGAAGTCTAAGAGCAAGAAAG
CTTCCAAAGATAAGAAAAAGAAATCGAAAGACAAGGAAAGCAGCTCTGACGATGAAAATGAGACAAAAAAGGTTTCGATT
TTTGCTTCAGAAGATGGTATTATTCATACCAATCCCAAATATGATGGTGCCAATATTATTCCGAAGCAAACCGAGATTGC
TCAAATCTATCCTGATATTCAAAAAACAAGAAAAGTGTTAATCACCTATTATGCTTCTTCTGATGATGTTGTTTCTATGA
AAAAGGGGCAAACCGCTCGTCTTTCCTTGGAAAAAAAGGGAAATGACAAGGTTGTTATTGAAGGAAAAATTAACAATGTC
GCTTCATCAGCAACTACTACTAAAAAAGGAAATCTCTTTAAGGTTACTGCCAAAGTAAAGGTTTCTAAGAAAAATAGCAA
ACTCATCAAGTATGGTATGACAGGCAAGACAGTCACTGTCATTGATAAAAAGACTTATTTTGATTATTTCAAAGATAAAT
TACTGCATAAAATGGATAATTAG

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(160-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

100

100

1

Multiple sequence alignment