Detailed information NTG0388752

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: F6X00_RS06560
• Genome accession: NZ_CP044206
• Coordinates: 1389906..1390898 (+)
• Length: 330 a.a.
• NCBI ID: WP_017420278.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain Vv180806
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1384906..1395898

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F6X00_RS06525 (F6X00_06650)	ftsB	1384937..1385218 (+)	282	WP_011079514.1	cell division protein FtsB	-
F6X00_RS06530 (F6X00_06655)	ispD	1385218..1385931 (+)	714	WP_123773060.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
F6X00_RS06535 (F6X00_06660)	ispF	1385928..1386404 (+)	477	WP_182290663.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
F6X00_RS06540 (F6X00_06665)	truD	1386440..1387483 (+)	1044	WP_182290665.1	tRNA pseudouridine(13) synthase TruD	-
F6X00_RS06545 (F6X00_06670)	surE	1387489..1388256 (+)	768	WP_013571125.1	5'/3'-nucleotidase SurE	-
F6X00_RS06550 (F6X00_06675)	-	1388259..1388885 (+)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
F6X00_RS06555 (F6X00_06680)	-	1388899..1389825 (+)	927	WP_373368655.1	peptidoglycan DD-metalloendopeptidase family protein	-
F6X00_RS06560 (F6X00_06685)	rpoS	1389906..1390898 (+)	993	WP_017420278.1	RNA polymerase sigma factor RpoS	Regulator
F6X00_RS06565 (F6X00_06690)	mutS	1390974..1393535 (-)	2562	WP_039554641.1	DNA mismatch repair protein MutS	-
F6X00_RS06570 (F6X00_06695)	pncC	1393619..1394122 (+)	504	WP_039554640.1	nicotinamide-nucleotide amidase	-
F6X00_RS06575 (F6X00_06700)	recA	1394256..1395305 (+)	1050	WP_011079524.1	recombinase RecA	Machinery gene
F6X00_RS06580 (F6X00_06705)	recX	1395409..1395870 (+)	462	WP_061058917.1	recombination regulator RecX	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38011.07 Da
• Isoelectric Point: 4.4761

>NTDB_id=388752 F6X00_RS06560 WP_017420278.1 1389906..1390898(+) (rpoS) [Vibrio vulnificus strain Vv180806]
MSISNTVTKVKDLDVNQMDDDFNDDIEMNEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=388752 F6X00_RS06560 WP_017420278.1 1389906..1390898(+) (rpoS) [Vibrio vulnificus strain Vv180806]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATCTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATGAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACGCAGCTCTATCTAGGAGAAATTGGCTTTTCTCCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCGCGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTGGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGTGCGGTAGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCGACTTACGCAACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGCTCTGTCGATACGCCGATTGGTGGAGATGGAGAGAAGGCGTTATTGGATATTATTCCTGATGCAAACAAC
TCAGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGCTATGAGCCTTCAACACTGGAAGAAGTTGGGCAAGAGATTGGTT
TAACTCGTGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAATTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (91-160)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.602	100	0.833